PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_8920V3.1.p
Common NamePHYPADRAFT_204223
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SRS
Protein Properties Length: 292aa    MW: 30867.7 Da    PI: 8.6611
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_8920V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702212.78.7e-66722332153
             DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkls 92 
                        ++g+++Cq+CGnqakkdC+++RCRtCCksr+fdCathvkstWvpa+krrerq+++aaa++     + + +skr r+   ++ + a++s++++
  Pp3c18_8920V3.1.p  72 GHGSTACQECGNQAKKDCSFQRCRTCCKSRDFDCATHVKSTWVPASKRRERQAAEAAAAAA---GQPRPKSKRARTItLAAPAGATTSMTTT 160
                        57899**********************************************9988887433...3344555555554367788899999999 PP

             DUF702  93 saeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                        sa+s++ ++++s            lP+ev+++a+f+cvrv++v+dge+e+aYq++v+igGh+fkG+LydqGl+
  Pp3c18_8920V3.1.p 161 SANSPRGSDINSghpsqpaqgrggLPPEVRAQALFKCVRVTGVEDGENECAYQATVKIGGHIFKGLLYDQGLD 233
                        ***********9***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-5875233IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.3E-2678119IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.9E-27185232IPR006511Lateral Root Primordium type 1, C-terminal
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEPWAARTLR DDVVRVMDVQ PLNEQPPSRQ VLQHNPQAAQ PNVDAVPQVH QLQLDATKHK  60
VPHAPQVPQV MGHGSTACQE CGNQAKKDCS FQRCRTCCKS RDFDCATHVK STWVPASKRR  120
ERQAAEAAAA AAGQPRPKSK RARTITLAAP AGATTSMTTT SANSPRGSDI NSGHPSQPAQ  180
GRGGLPPEVR AQALFKCVRV TGVEDGENEC AYQATVKIGG HIFKGLLYDQ GLDLAQQAVT  240
SNPSELQLGG GGAGGVRSNL PSSSPLLDPS GMYAGNPLLG GEDSRVAPWF T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.167840.0protonema
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9534191e-103AY953419.1 Physcomitrella patens putative zinc finger protein (SHI) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402501.10.0protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
TrEMBLA9RNV10.0A9RNV1_PHYPA; Predicted protein
STRINGPP1S19_109V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-38Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]