PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_10050V3.2.p
Common NamePHYPADRAFT_168390
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 204aa    MW: 22935.8 Da    PI: 9.7768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_10050V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.6e-14105147247
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                          ++GVr ++  ++Wv eIr  s   ++++++lg++ t+eeAa+a++
  Pp3c19_10050V3.2.p 105 IFRGVRHRPELNKWVTEIRPTS---QKRKIWLGTYETPEEAARAYD 147
                         58***************99942...35******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.57E-16104151No hitNo description
PfamPF008478.2E-10105147IPR001471AP2/ERF domain
SMARTSM003803.6E-14105168IPR001471AP2/ERF domain
PROSITE profilePS5103215.751105165IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-13105161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-19106163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MNLTISSILE QGRPKSKNWW DPCGGGKARE QGLQLPSKID SARVKNEVDE SKSESSQEEE  60
RKGMRLAARD DSGQNALKFR NIDLNKVPSA WDSDDVSVGT GDTTIFRGVR HRPELNKWVT  120
EIRPTSQKRK IWLGTYETPE EAARAYDVGI FYTKKKIPYN FEDSPQQLQL YPIPPELPWE  180
SFAALVKQRA TSAAKRARVP SSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.55680.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356487.11e-149ethylene-responsive transcription factor ERF110-like
RefseqXP_024356488.11e-149ethylene-responsive transcription factor ERF110-like
TrEMBLA0A2K1IXX61e-147A0A2K1IXX6_PHYPA; Uncharacterized protein
STRINGPP1S174_79V6.11e-148(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-13related to AP2 11
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]