PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_15710V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 477aa    MW: 51014.1 Da    PI: 7.6229
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_15710V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10295353563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         kr++r   NR +A rs +RK  +i eLe+kv+ L++e ++L  +l +l+k    l +e+
  Pp3c19_15710V3.1.p 295 KRAKRILANRQSAARSKERKMRYISELERKVQGLQTEATTLSTQLAMLQKDTTGLATEN 353
                         9************************************************9887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-16291355IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.921293356IPR004827Basic-leucine zipper domain
PfamPF001709.0E-10295353IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.99E-11295347No hitNo description
Gene3DG3DSA:1.20.5.1704.4E-11295350No hitNo description
CDDcd147031.72E-22296345No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEGLGKGYDA FVERLQSEFG ATSVGKGSGS SSTSNIAAHP PHPSQSQLHQ SRYVGYPSTS  60
HPFTVKRETS PSVSETSMRS RESYSLEVNM QDAVTSASPA SISGSGQPPR MPSPGHNFST  120
DVNQMPDTPP RRRGHRRAQS EIAFRLPDDA SFESELGVHG SEMPTLSDDG AEDLFSMYID  180
MEQINNMSGT SGQAGAKAGG EGSNAPAPSA HHARSLSADG SLGNLAGNRT GVGVGGGGGN  240
NSAPSEARRP RHGHSSSMDG STSFRHDLLS GDFEGDTKKV MASAKLSEIA LIDPKRAKRI  300
LANRQSAARS KERKMRYISE LERKVQGLQT EATTLSTQLA MLQKDTTGLA TENNELKLRL  360
QAMEQQAHLR DALNEALREE VQRLKVATGQ ISNGSVQNLS MGGQHLFQMQ NQAFNSQQLQ  420
QAQSGLNNPA QQQQQASQEQ MHSEYMQRGA YNLSSGFIKN EGPSIAVKHA SSASFG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.98720.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356505.10.0transcription factor RF2a-like
RefseqXP_024356506.10.0transcription factor RF2a-like
SwissprotQ040883e-85POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2K1IYK40.0A0A2K1IYK4_PHYPA; Uncharacterized protein
STRINGPP1S20_118V6.10.0(Physcomitrella patens)
STRINGPP1S20_119V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.19e-90bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]