PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_15730V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 452aa    MW: 48964 Da    PI: 7.362
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_15730V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.8e-11278336563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+k   +l++e+
  Pp3c19_15730V3.5.p 278 KRAKRILANRQSAARSKERKMRYISELERKVQSLQTEATTLSAQLTLLQKDTTSLTTEN 336
                         9******************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.6E-17274338IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.243276339IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-11278333No hitNo description
SuperFamilySSF579596.12E-11278331No hitNo description
PfamPF001703.9E-10278336IPR004827Basic-leucine zipper domain
CDDcd147032.65E-23279328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEGLGEGYEA FVERLQSAAN TAAKVSGNSS TSNSAGHPPH PTQSQVHQSR YVGYPSTSHP  60
FTVKRETSPA LSESSMRSRE SLEVSMQDAV NSPVPPGFLS SGQPPRIPSP AHNYSKDVNQ  120
MPDSPPRRRG HRRAQSEIAL RLPDEASFER EMHGSEMPAL SDEGGEDLVS MYIDMEQINN  180
FTATSGQAGA KSAGEESNGL PPTSSHHSRS LSMDALAGFN SSRAELGGNY GSSEVPRRPR  240
HQHSSSLDGS TSVDIEGLDS KKAMASAKLS EIALIDPKRA KRILANRQSA ARSKERKMRY  300
ISELERKVQS LQTEATTLSA QLTLLQKDTT SLTTENSELK LRLQAMEQQA QLRDALHEAL  360
RDEVQRLRVA TGQLSNGSGQ NSSLGGQHVF QMQNQSLNAQ HIQHLQQTAL NNQQQMHTEY  420
MQRGGYGLSS GFMKAEGSGI AINHGSSSSF G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155070.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024404099.10.0transcription factor RF2a-like
SwissprotQ040883e-81POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2K1INE90.0A0A2K1INE9_PHYPA; Uncharacterized protein
STRINGPP1S20_116V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-72bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]