PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_19910V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 476aa MW: 52453.3 Da PI: 7.4003

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_19910V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.3e-12	317	368	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr l+P +K + a+i A+e++++L+ Pp3c19_19910V3.1.p 317 QRMTHIAVERNRRKQMNEHLTALRALMPGY---FIQKGDQASIIGGAIEFVRELE 368 79*************************9...9***************9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.75E-14	315	372	No hit	No description
SuperFamily	SSF47459	1.06E-15	316	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.275	316	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-13	317	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	317	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-9	322	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MDYPDVVEFS TSKTFWNSED ALLDSFYKPL ASTMASMEGS CCSTLLFPST SSTCDNGGNN 60 KVFKRPYQQT ILDEKFEGGA ESRGISESCC ANASAGSVVD TSQCSWISGS PLFHGAEGMQ 120 FCEIFDNAGL RVQFHHRDVS HTQDQLGAFN SSAHVGSDSS IPRDFDHDFD SQAFHNPLMQ 180 QSSFRHPEFD LQLVTKQRNA KASWLSPRFH ASMSLDLREM PHNKHPGSQC STTAGFTKVL 240 HGAEPASSDH NMESFGRLTI AASDESKNIK SHEANAPSEG ATPSVSGMHE GSGIMHNLEP 300 KRKRSKTQKH GDEVESQRMT HIAVERNRRK QMNEHLTALR ALMPGYFIQK GDQASIIGGA 360 IEFVRELEHL LHCLQAQKRQ RAQSDISNLG NPSICPPAMP SLDQLHRTLP PLSFINSQGV 420 STDTHSSSNT TRNSHNSRFY SPHRLPVSPT LLPAPPSSPT LDTKSWGRRS RTRRA*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MDYPDVVEFS TSKTFWNSED ALLDSFYKPL ASTMASMEGS CCSTLLFPST SSTCDNGGNN  60
KVFKRPYQQT ILDEKFEGGA ESRGISESCC ANASAGSVVD TSQCSWISGS PLFHGAEGMQ  120
FCEIFDNAGL RVQFHHRDVS HTQDQLGAFN SSAHVGSDSS IPRDFDHDFD SQAFHNPLMQ  180
QSSFRHPEFD LQLVTKQRNA KASWLSPRFH ASMSLDLREM PHNKHPGSQC STTAGFTKVL  240
HGAEPASSDH NMESFGRLTI AASDESKNIK SHEANAPSEG ATPSVSGMHE GSGIMHNLEP  300
KRKRSKTQKH GDEVESQRMT HIAVERNRRK QMNEHLTALR ALMPGYFIQK GDQASIIGGA  360
IEFVRELEHL LHCLQAQKRQ RAQSDISNLG NPSICPPAMP SLDQLHRTLP PLSFINSQGV  420
STDTHSSSNT TRNSHNSRFY SPHRLPVSPT LLPAPPSSPT LDTKSWGRRS RTRRA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	328	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403754.1	0.0	uncharacterized protein LOC112295936
TrEMBL	A0A2K1IZ25	0.0	A0A2K1IZ25_PHYPA; Uncharacterized protein
STRING	PP1S519_13V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	7e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c19_19910V3.1.p