PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_19910V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 571aa    MW: 62710.5 Da    PI: 7.4048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_19910V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12317368155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr l+P       +K + a+i   A+e++++L+
  Pp3c19_19910V3.2.p 317 QRMTHIAVERNRRKQMNEHLTALRALMPGY---FIQKGDQASIIGGAIEFVRELE 368
                         79***************************9...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-13315372No hitNo description
SuperFamilySSF474591.44E-15316382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.275316367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9317368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-13317381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-9322373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDYPDVVEFS TSKTFWNSED ALLDSFYKPL ASTMASMEGS CCSTLLFPST SSTCDNGGNN  60
KVFKRPYQQT ILDEKFEGGA ESRGISESCC ANASAGSVVD TSQCSWISGS PLFHGAEGMQ  120
FCEIFDNAGL RVQFHHRDVS HTQDQLGAFN SSAHVGSDSS IPRDFDHDFD SQAFHNPLMQ  180
QSSFRHPEFD LQLVTKQRNA KASWLSPRFH ASMSLDLREM PHNKHPGSQC STTAGFTKVL  240
HGAEPASSDH NMESFGRLTI AASDESKNIK SHEANAPSEG ATPSVSGMHE GSGIMHNLEP  300
KRKRSKTQKH GDEVESQRMT HIAVERNRRK QMNEHLTALR ALMPGYFIQK GDQASIIGGA  360
IEFVRELEHL LHCLQAQKRQ RAQSDISNLG NPSICPPAMP SLDQLHRTLP PLSFINSQTY  420
GSKLIFAGSV HRHPQQQQHH TKLTQLEVLL TSPATSVANP SSSTPIKPHT GHEIMGEAKS  480
DQASVNVKMV RIDQALVKVL APRRSGQLLR TVMALEGLAL TVLHTNITTV HHTVLFSFHV  540
HMGLLCRMSV KEIATVLHGT FSSSPPHSLQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317328RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403754.10.0uncharacterized protein LOC112295936
TrEMBLA0A2K1IZ250.0A0A2K1IZ25_PHYPA; Uncharacterized protein
STRINGPP1S519_13V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-37bHLH family protein