PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_23130V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 471aa    MW: 53055.4 Da    PI: 6.7639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_23130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12416464247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         ++W+ eE ell+++v+++G+g+Wk+I +       gRt+ ++k++w+++
  Pp3c19_23130V3.1.p 416 KKWSNEEVELLKRGVQEHGKGHWKKILNDNAdafHGRTEVDLKDKWRNL 464
                         58***************************999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.309410469IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-15411464IPR009057Homeodomain-like
SuperFamilySSF466898.22E-15412465IPR009057Homeodomain-like
SMARTSM007173.9E-9414467IPR001005SANT/Myb domain
CDDcd116602.20E-19416466No hitNo description
PfamPF002494.4E-10416464IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MERTPREGKE LGFKLIHAWI WEYVLKHTVG VNIIQELTKL LPFPIGVLRL RQMMLIKDLI  60
QQLGDPIPNE IDVDLALQYL EGLENSLASK PAEELEESVR GGLLQPALER KDLERPLLEL  120
KSELRTSLGE KRVDAQQAKV IRDEFRALAA KAWILLGPLV LEEFAASTIA GKRSLRAQSS  180
VRSPHPVAIP DSEDRSFHDT QETLVDRRFE QLEGALRASQ SELQNILDVK IAEVKRSVVV  240
LEDAHHSLKK LVKDQAEVCK QHVRLKNPGT TSQCLGLSVL NLPPLAHAPG LEDDNMYEDK  300
DRPSSNAHCS QLSSEYPHPS NSQDPYSSPS HPLLLDPGLH NIKETARALE SSWSPSKITG  360
RVGFMHGGQR EKRPFQEIDL CGEVLICNSE QTVRECKHGE SLLGIGSGST QRRTQKKWSN  420
EEVELLKRGV QEHGKGHWKK ILNDNADAFH GRTEVDLKDK WRNLEKYERL *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1IZD50.0A0A2K1IZD5_PHYPA; Uncharacterized protein
STRINGPP1S471_2V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-12MYB_related family protein