PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_2670V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 1253aa MW: 133420 Da PI: 6.9532

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_2670V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	772	822	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c19_2670V3.2.p 772 EKTIGLNVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 822 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.665	754	842	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-25	775	822	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-19	1165	1248	No hit	No description
SMART	SM00666	2.8E-16	1168	1250	IPR000270	PB1 domain
PROSITE profile	PS51745	22.227	1168	1250	IPR000270	PB1 domain
Pfam	PF00564	8.6E-14	1169	1247	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.5E-19	1169	1248	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1253 aa Download sequence Send to blast
MELPQASRAC VPRWRPTTEF GGHGQQQQVV SQAMGVLAGL GGSAGESKFV MDEAVLTDLM 60 ELEPLHEQLL GESWAEGNYG DYGGYLALPA SSHGGVFAGP VPALASLQAF SYANGSLAAS 120 VQAFQQELML QQALESSQQQ SIPGASSSQS SLAMSSAVVS GMSSYSAAVG GRSLSSPSLS 180 EAAHMLLGNQ GLAGVVARDG RGMGDSRGGV DGRNGKVEIG EGGVVDKEDD KSSVSTVEGN 240 PVSSGNLEAG VRRPRIAAEL PLPLRDRMME ALRLIGQSLE DVLVQVWMPV VQGSRKCLLT 300 REQPFVVEPN NEQLWLYRNM TEGYEFPAER AEGKVLELPG RVFTGQQAEW TPNVQYYSSQ 360 EYLRVKEAQR CDIRGSLAVP VLDPVSRQCV AVIELVGRAE KIQYGPDVDI IARALQAVNL 420 TCPVGLETPP LERSSWGRQA ALAEIAEVLK GVCEAHKLPL AQTWVPTYRY GGRGDAKAQS 480 HNAVQVNGGR GVRKVVLRIV DGDGPCYVGE ARMWGFRRAC LEHALEKGQG VPGKAMLTNL 540 PVFDSDVKSF SKDEYPLGHY AKLFGLVSAV AIRLRSVHTG DEDFILEFFL PMDCVESEKQ 600 QQMLNSLSIT MQRICQSLRT LSERELEEER RVAMAESIEM QAKAVKLEAK EVCNKEDFLA 660 WRGGFNRHGG GVNGEETSPA FSQVMQQQHG VQQAARFVPQ RSALQQFSHG VLLGRGRDDG 720 LRIPESHVYP GYHSEQLPVE QGLGMGGFGC PGLGQDVASH RRRFERRRGT TEKTIGLNVL 780 QQYFAGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVSRSLKKLQ GVIDSVQGAE 840 GALRISALTG DLSSAAVAAA AVSGHMNKGL AASSPGNLSV SWSTLSPSCV EGKEAHAKVG 900 SAESLLGPKE ENRRRHDPCS SQKVLLSMLK PTLQFRPEDD RVVSSLEGKV LGGSNGDDGQ 960 GRAQVDNGDM CRSNDGNSTS SGGSNPNVKA GYGSNGGHYC PGMSPLASGS MLTGGDADRG 1020 DDGGKRSVGT AFQGVGNAGK GSGAGKGQQA SPLGRSGEQP VPGRGGAGRV SDLVRGATPR 1080 GWNESRVHGG GGALAALKGG DQHGSHGFSE DPVSSCNRAN DGEEEVTGCG LESPGFGSSP 1140 ASDCSSPSTG VNGTSNKKAW AGQEDGAAIT VKVTHGLDTV RVKFSRNGSF VELKEEVRRR 1200 LKLVGQKFSL KYLDDDEEWM LLACDADLQE SIDLMRVSGR HAIKLMVCNS ML*

Sequence ? help Back to Top

Protein Sequence Length: 1253 aa Download sequence Send to blast

MELPQASRAC VPRWRPTTEF GGHGQQQQVV SQAMGVLAGL GGSAGESKFV MDEAVLTDLM  60
ELEPLHEQLL GESWAEGNYG DYGGYLALPA SSHGGVFAGP VPALASLQAF SYANGSLAAS  120
VQAFQQELML QQALESSQQQ SIPGASSSQS SLAMSSAVVS GMSSYSAAVG GRSLSSPSLS  180
EAAHMLLGNQ GLAGVVARDG RGMGDSRGGV DGRNGKVEIG EGGVVDKEDD KSSVSTVEGN  240
PVSSGNLEAG VRRPRIAAEL PLPLRDRMME ALRLIGQSLE DVLVQVWMPV VQGSRKCLLT  300
REQPFVVEPN NEQLWLYRNM TEGYEFPAER AEGKVLELPG RVFTGQQAEW TPNVQYYSSQ  360
EYLRVKEAQR CDIRGSLAVP VLDPVSRQCV AVIELVGRAE KIQYGPDVDI IARALQAVNL  420
TCPVGLETPP LERSSWGRQA ALAEIAEVLK GVCEAHKLPL AQTWVPTYRY GGRGDAKAQS  480
HNAVQVNGGR GVRKVVLRIV DGDGPCYVGE ARMWGFRRAC LEHALEKGQG VPGKAMLTNL  540
PVFDSDVKSF SKDEYPLGHY AKLFGLVSAV AIRLRSVHTG DEDFILEFFL PMDCVESEKQ  600
QQMLNSLSIT MQRICQSLRT LSERELEEER RVAMAESIEM QAKAVKLEAK EVCNKEDFLA  660
WRGGFNRHGG GVNGEETSPA FSQVMQQQHG VQQAARFVPQ RSALQQFSHG VLLGRGRDDG  720
LRIPESHVYP GYHSEQLPVE QGLGMGGFGC PGLGQDVASH RRRFERRRGT TEKTIGLNVL  780
QQYFAGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVSRSLKKLQ GVIDSVQGAE  840
GALRISALTG DLSSAAVAAA AVSGHMNKGL AASSPGNLSV SWSTLSPSCV EGKEAHAKVG  900
SAESLLGPKE ENRRRHDPCS SQKVLLSMLK PTLQFRPEDD RVVSSLEGKV LGGSNGDDGQ  960
GRAQVDNGDM CRSNDGNSTS SGGSNPNVKA GYGSNGGHYC PGMSPLASGS MLTGGDADRG  1020
DDGGKRSVGT AFQGVGNAGK GSGAGKGQQA SPLGRSGEQP VPGRGGAGRV SDLVRGATPR  1080
GWNESRVHGG GGALAALKGG DQHGSHGFSE DPVSSCNRAN DGEEEVTGCG LESPGFGSSP  1140
ASDCSSPSTG VNGTSNKKAW AGQEDGAAIT VKVTHGLDTV RVKFSRNGSF VELKEEVRRR  1200
LKLVGQKFSL KYLDDDEEWM LLACDADLQE SIDLMRVSGR HAIKLMVCNS ML*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16950	1e-116	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024404168.1	0.0	protein NLP1-like
TrEMBL	A0A2K1IWX0	0.0	A0A2K1IWX0_PHYPA; Uncharacterized protein
STRING	PP1S109_79V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	9e-87	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Pp3c19_2670V3.2.p