PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_2940V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 314aa MW: 34836.4 Da PI: 9.6153

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_2940V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.8	1.4e-34	57	111	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl Pp3c19_2940V3.2.p 57 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 111 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-34	54	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.243	54	114	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.1E-24	57	112	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.05E-17	57	112	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-9	59	110	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-21	150	197	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MFQMKSKYMN PGISSPGPYQ NRAQPSVYAH DKLSPPYGIT QTMNGGDMVS LSPADPKPRL 60 RWTPELHERF VDAVTQLGGA DKATPKSVMR VMGVKGLTLY HLKSHLQKYR LGKQLNRDQH 120 LQNKDGSLQR SNSLSDGMQQ LKPQNLQDGM QMSEQLQLQL EVQQRLHDQL EVQRHLQMRI 180 QAQGKYLQSI LEKAKETLAS HTMESPSLEA AHAELSELAT KVTTLGMFPS GFSNINMPGM 240 AQPDPLMALH PQPRQPARNS DASPQKSFLN TNAEDNKGVS GSGDPQGASG NYMSNSEFAF 300 FHQLPNDAFR LTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	57	113	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	57	113	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	57	113	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	57	113	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	57	113	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	57	113	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	57	113	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	57	113	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	57	113	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	57	113	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	57	113	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	57	113	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403588.1	0.0	protein PHR1-LIKE 2-like
Swissprot	Q94A57	2e-67	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2K1IMQ6	1e-171	A0A2K1IMQ6_PHYPA; Uncharacterized protein
STRING	PP1S109_107V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-55	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c19_2940V3.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]