PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_2940V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 226aa MW: 25178.4 Da PI: 8.8866

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_2940V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.2	2.7e-11	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQkYRl Pp3c19_2940V3.4.p 1 MRVMGVKGLTLYHLKSHLQKYRL 23 789*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-10	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	3.1E-21	62	109	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MRVMGVKGLT LYHLKSHLQK YRLGKQLNRD QHLQNKDGSL QRSNSLSDGM QQLKPQNLQD 60 GMQMSEQLQL QLEVQQRLHD QLEVQRHLQM RIQAQGKYLQ SILEKAKETL ASHTMESPSL 120 EAAHAELSEL ATKVTTLGMF PSGFSNINMP GMAQPDPLMA LHPQPRQPAR NSDASPQKSF 180 LNTNAEDNKG VSGSGDPQGA SGNYMSNSEF AFFHQLPNDA FRLTN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403588.1	1e-162	protein PHR1-LIKE 2-like
Swissprot	Q94A57	2e-40	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2K1IWZ2	1e-163	A0A2K1IWZ2_PHYPA; Uncharacterized protein
STRING	PP1S109_107V6.1	1e-162	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-29	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c19_2940V3.4.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]