PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_4900V3.3.p

Common Name

PHYPADRAFT_171589

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 266aa MW: 29523.5 Da PI: 4.0341

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_4900V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.1	5.8e-07	68	109	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Err R ri + +e L ++P+ + +K++iL A eYI +Lq Pp3c19_4900V3.3.p 68 ERRLRGRIHEQLELLGAVIPSsC------SGEKSSILADAYEYIEKLQ 109 9******************65......57899***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.127	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-5	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-9	66	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-8	66	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.47E-5	68	113	No hit	No description
Pfam	PF00010	1.7E-4	68	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	3.37E-5	179	232	No hit	No description
Gene3D	G3DSA:3.30.70.260	5.9E-5	179	237	No hit	No description
PROSITE profile	PS51671	10.478	183	264	IPR002912	ACT domain
CDD	cd02116	0.00397	184	236	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MALSTGLPLE FNDAVDYFNY TNQDYSSDLT DTENDEEYAC TPRGFQPILP RSCKRTYGVF 60 LESEVVPERR LRGRIHEQLE LLGAVIPSSC SGEKSSILAD AYEYIEKLQR QVEELNYELD 120 MESYLGDDLC HCEDDCSCCE HNLSPSSTER TAESNAGLES SSGSDCGCSQ PTVEIVRTEE 180 GLKIHIECDK RPGLLVEIME LLESRGLNVE QASIACVDQL VFDGISSEIE GNDAEDSRHM 240 THVNAEDVEA SLRSLIADQR QCTSH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16056	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356358.1	0.0	transcription factor SCREAM2-like
TrEMBL	A9TRW4	0.0	A9TRW4_PHYPA; Predicted protein
STRING	PP1S300_66V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12860.1	8e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c19_4900V3.3.p
Entrez Gene	5944538

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]