PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_9910V3.1.p
Common NamePHYPADRAFT_88814, SDG1505
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 1382aa    MW: 154605 Da    PI: 8.8481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_9910V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014911934123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C +C++ F+   +L rH rt H
  Pp3c19_9910V3.1.p 911 YSCRYCPMKFPVLPDLGRHHRTkH 934
                        99*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.8731754IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18731759IPR007087Zinc finger, C2H2
PROSITE patternPS000280733754IPR007087Zinc finger, C2H2
SMARTSM003553765791IPR015880Zinc finger, C2H2-like
SMARTSM003557.4802825IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280804826IPR007087Zinc finger, C2H2
SMARTSM003550.067911934IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12911939IPR007087Zinc finger, C2H2
SuperFamilySSF576672.85E-5911933No hitNo description
PROSITE patternPS000280913934IPR007087Zinc finger, C2H2
SuperFamilySSF576672.85E-510681093No hitNo description
PROSITE profilePS5015710.49210731101IPR007087Zinc finger, C2H2
SMARTSM003550.03910731096IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010751096IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.170.270.101.5E-4911971380No hitNo description
SuperFamilySSF821992.45E-5012071380No hitNo description
PfamPF050331.1E-712081283IPR007728Pre-SET domain
PROSITE profilePS508678.9812121288IPR007728Pre-SET domain
PROSITE profilePS5028012.91212911381IPR001214SET domain
PfamPF008563.0E-813021380IPR001214SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1382 aa     Download sequence    Send to blast
MSLLKLLFDI PEAGGESNFT VEEQEELMAF EHNLDDHLVG NFALPATDDQ LNFLQGAGLQ  60
TEASLESVQD RVVFPVAYGT HNRHEVDSNH GAGVGKEVLP LMSMVIALEN GHELGSSTID  120
HVTQELSGIV APRTQEPVSL EQDSVPLKPL VPVLATPPEN TACSVTLEPA LVTLENAQVL  180
ELAVNSLQKD ASSKKDHTSL KHQESGKAVW IKWRGKWQAA IQVRVEDCRV ATLKAMPTYR  240
KKEYVPIYLL TNRTYIWIDA QNICDISQNP EPLVTGLHSD WLRLVVDTGA PRRRTFLSLG  300
WEMLDISDRL HILGVVERAR YVSAWKEFAR EATEATKYSE LGSLLVRIHA VVEPVYVRQS  360
WVKKRLSAWT EECIKAGTAA AVEKLTKECI RVILWDEAAT LWEAPEQPVL DPGWTDWKGP  420
AFDELTLPED DIPVPADKTS RPFSSLSITP SPAQEKQYTG AKRGRKPKDR SVQSQHLASA  480
TRVTTRKQVK VETRNDAGPS SSAAMGTLPT HSMKNVQNYS TDHAEKTPDQ VGGNTFATPV  540
KDDGAVVKIE QLNPQLSDRR TQKHLKGAAS NGNGGSKISG LSTDPINDKN LSRLVANMSV  600
REKRSFIKAR ELLCQYMNEG LSLREEGNDG AQCNQMIDSI IDEFAKDLLS GEMLLKILAS  660
EKDRLAKIVL EGGLVSRKSS NIIWDVGLSG SHSGEFWKPE VKTVSNDASA WQSTPSPVQI  720
GDKGACRDTR YLCSLCGQNF EQLCVLGKHW KEQHKREARL FEKCLLCRIC DKSNAMFRNK  780
TSVTRHLKKT HPNVSMSSQA WSVCLMCDKE YLDFDHLWQH VEDQHHNQWS NPDFARRVKS  840
TLKPRMGQKR SFYCETFNTL WEVKQHKQIL HRGPELLRSG TKRNFDAMNS MVTANDSKRV  900
DVMPAKDTYK YSCRYCPMKF PVLPDLGRHH RTKHKDKTDE LVKDQFPTNG MPSVQTRKTK  960
HEETRGDWHP VPTGKGGDRD DNGKKWRYRA RAKAKNASRG RSVSMKKRSG GAEAILQRMR  1020
AVKQVLKEQK KKRSLRKRDR KAESARRLAK LAGISGTLTP APARVTTTDA NRFKCRFCGM  1080
RFALLPDLAQ HHQVEHSAVK QAFIANGRGE CQTGIYTLTN DGIIGPLQGE LLNRVPTAKS  1140
CWRLLAVPAV RIGFLMNLAR AKLEIRWHQD KYLCPDGCKT YGAIQPVPSL EIDRSALAKS  1200
SSNACAGNNS QVGCSCTEDE CSASTCDHMS MFDTDNTEAF TIDGKFIRGQ FPYDEFGRII  1260
LDVGYMVYEC NSSCQCKDPC RNRVLQKGVH LKLEVFISPH KGWGVRAAEA ISRGTFVCEY  1320
VGEVLNDSEA NKRGKRYDQV GCSYLYNIDA HLDVVGVKSI SKPFVIDATK YGNVARFINH  1380
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mvh_A8e-301185138039219Cryptic loci regulator 4
1mvx_A8e-301185138039219CRYPTIC LOCI REGULATOR 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360708.10.0histone-lysine N-methyltransferase SUVR5-like isoform X2
TrEMBLA0A2K1IXY40.0A0A2K1IXY4_PHYPA; Uncharacterized protein
STRINGPP1S174_93V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]