PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_9920V3.1.p
Common NamePHYPADRAFT_88814, SDG1505
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 536aa    MW: 61055.4 Da    PI: 10.5696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_9920V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047276299123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C +C++ F+   +L rH rt H
  Pp3c19_9920V3.1.p 276 YSCRYCPMKFPVLPDLGRHHRTkH 299
                        99*******************999 PP
2zf-C2H211.50.00092438461123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        +kC  Cg++F    +L +H ++ H
  Pp3c19_9920V3.1.p 438 FKCRFCGMRFALLPDLAQHHQVeH 461
                        89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.896119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1896124IPR007087Zinc finger, C2H2
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003553130156IPR015880Zinc finger, C2H2-like
SMARTSM003557.4167190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169191IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12276304IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-6276298No hitNo description
SMARTSM003550.067276299IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280278299IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-6433458No hitNo description
PROSITE profilePS5015710.492438466IPR007087Zinc finger, C2H2
SMARTSM003550.039438461IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280440461IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MIDSIIDEFA KDLLSGEMLL KILASEKDRL AKIVLEGGLV SRKSSNIIWD VGLSGSHSGE  60
FWKPEVKTVS NDASAWQSTP SPVQIGDKGA CRDTRYLCSL CGQNFEQLCV LGKHWKEQHK  120
REARLFEKCL LCRICDKSNA MFRNKTSVTR HLKKTHPNVS MSSQAWSVCL MCDKEYLDFD  180
HLWQHVEDQH HNQWSNPDFA RRVKSTLKPR MGQKRSFYCE TFNTLWEVKQ HKQILHRGPE  240
LLRSGTKRNF DAMNSMVTAN DSKRVDVMPA KDTYKYSCRY CPMKFPVLPD LGRHHRTKHK  300
DKTDELVKDQ FPTNGMPSVQ TRKTKHEETR GDWHPVPTGK GGDRDDNGKK WRYRARAKAK  360
NASRGRSVSM KKRSGGAEAI LQRMRAVKQV LKEQKKKRSL RKRDRKAESA RRLAKLAGIS  420
GTLTPAPARV TTTDANRFKC RFCGMRFALL PDLAQHHQVE HSAVKQAFIA NGRGECQTGI  480
YTLTNDGIIG PLQGELLNRV PTAKSCWRLL AVPAVRIGFL MNLARGMRIC HQGYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360707.10.0histone-lysine N-methyltransferase SUVR5-like isoform X1
RefseqXP_024360708.10.0histone-lysine N-methyltransferase SUVR5-like isoform X2
TrEMBLA0A2K1IXY40.0A0A2K1IXY4_PHYPA; Uncharacterized protein
STRINGPP1S174_93V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]