PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_16920V3.4.p

Common Name

PHYPADRAFT_163971

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 661aa MW: 69084.5 Da PI: 9.9718

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_16920V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pp3c1_16920V3.4.p 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	12.3	0.00051	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pp3c1_16920V3.4.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.3E-5	85	108	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.3E-7	85	108	No hit	No description
PROSITE profile	PS50157	10.949	86	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	127	157	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.4E-4	150	183	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.3E-7	157	182	No hit	No description
SMART	SM00355	140	162	182	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MTLSNLTSAS AGEASVSSGN RTDGTNTGML PTSSTPATPT VTTVTVSSGQ PLAVAVKRKR 60 NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK 120 EVRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEDSARV SAGKQGGGQP DSLLGSGSSS 240 MSVIGLPGMM NTLDYEMPQA PRHSSGHLPL TPSGSLFAHL LASGNGQGLQ ASSSSQSGAT 300 TGMDISGFSD FSAAGANRID SGSATAGLSS TSSAGMASNA SSRSTNGGGN LSSVSPLFNP 360 QHQQQQHTAS AQMSATALLQ KAAQMGATAS NTSLFRGFGQ GGTDSDSMGI WQGQRQEQQP 420 QQQHLAQQQS QSQSQPQQHQ HQQQGRTGDL PLNNMSNMGN QPLMRRPGDL QSVSQGLGGS 480 SLGQTNNFGG VQGRLSESST NVQDFMNSLS GGAGMFGGPF GSMPSMFGPS STNMGGMLPP 540 STHRMSPSDV LAGSTFPGGG QGVFQGMSSS SSLLPGLGGS SRVENDSSDR FTRDFLGVGG 600 ASGITAAGGG MGRTLSPRDL ARITSLGPGV DLGVFFNQRE NLRSVNASGH SPGKSWDPST 660 *

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MTLSNLTSAS AGEASVSSGN RTDGTNTGML PTSSTPATPT VTTVTVSSGQ PLAVAVKRKR  60
NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK  120
EVRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEDSARV SAGKQGGGQP DSLLGSGSSS  240
MSVIGLPGMM NTLDYEMPQA PRHSSGHLPL TPSGSLFAHL LASGNGQGLQ ASSSSQSGAT  300
TGMDISGFSD FSAAGANRID SGSATAGLSS TSSAGMASNA SSRSTNGGGN LSSVSPLFNP  360
QHQQQQHTAS AQMSATALLQ KAAQMGATAS NTSLFRGFGQ GGTDSDSMGI WQGQRQEQQP  420
QQQHLAQQQS QSQSQPQQHQ HQQQGRTGDL PLNNMSNMGN QPLMRRPGDL QSVSQGLGGS  480
SLGQTNNFGG VQGRLSESST NVQDFMNSLS GGAGMFGGPF GSMPSMFGPS STNMGGMLPP  540
STHRMSPSDV LAGSTFPGGG QGVFQGMSSS SSLLPGLGGS SRVENDSSDR FTRDFLGVGG  600
ASGITAAGGG MGRTLSPRDL ARITSLGPGV DLGVFFNQRE NLRSVNASGH SPGKSWDPST  660
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	158	222	3	67	Zinc finger protein JACKDAW
5b3h_F	6e-35	158	222	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.13110	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390126.1	0.0	protein indeterminate-domain 2-like isoform X4
TrEMBL	A0A2K1L8H7	0.0	A0A2K1L8H7_PHYPA; Uncharacterized protein
TrEMBL	A9SBK6	0.0	A9SBK6_PHYPA; Predicted protein
STRING	PP1S63_51V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-113	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c1_16920V3.4.p
Entrez Gene	5926994

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]