PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_20230V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 717aa    MW: 75267.4 Da    PI: 10.3537
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_20230V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-052547123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  Pp3c1_20230V3.4.p 25 FVCEICNKGFQRDQNLQLHRRGH 47
                       89******************988 PP
2zf-C2H212.20.00056101123123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  Pp3c1_20230V3.4.p 101 WKCDKCSKRYAVQSDWKAHSKTC 123
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.97E-72447No hitNo description
Gene3DG3DSA:3.30.160.602.5E-52447IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9492547IPR007087Zinc finger, C2H2
SMARTSM003550.0172547IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
SMARTSM003552206696IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-489122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.97E-796121No hitNo description
SMARTSM00355140101121IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MIVYADPEAE VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTSKE  60
IRKRVYICPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS  120
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARVS AGKQGGEQPN GLMGPRSSSL  180
SVVGAPSSPR GNDVGITSGD PMASAGPLAS RSGSLPPSMA GLSGLNDLSR WCGTPGSGPV  240
SRTGTGLSLW LGPGPGPPGS QQQMHQLLSG SNGSSSFLMQ TRKGMQGGDG LSGMMNPLEY  300
DAPQASRPSS DHIPLIPSGN LYSHLFASGN GLQGIQGSSP SQSGGTAGMS ISGFSDFTPG  360
ANRMERGSVT AGLSSTSSPR MTSNSSSGNT NGGGNLSSVS PLFNAQQQQQ QQQHHNSSAQ  420
MSATALLQKA AQMGATVSNS SLLRGFGLGG ADSNSMGMWQ VQRQEQQQRQ QSQQPQQSQQ  480
QSQTQPQHQQ QSRSQPQQQQ QQGRTGDLPL NNMSNMVNHP LTRRPSDLQN VSQGLGGSSI  540
GQRNSFGGGQ GRLSDNSANV QDLMNSLSGG AGLFGAPLSS LPSSVFGPNS TSMGGMLPPG  600
TQRMSSGEVF ANSTFTGGQG VLQGMSSSSL LPGLGGSSRR ENDGSDRFTR DFLGVGGVSG  660
ITAAGGGMGR TLSPRDLASI ASLGSGVDLG AFFNQRDNLR SVGASGRSPG KSWDAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-3697161367Zinc finger protein JACKDAW
5b3h_F9e-3697161367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.16440.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381305.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A2K1L8X60.0A0A2K1L8X6_PHYPA; Uncharacterized protein
STRINGPP1S43_228V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2