PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_21760V3.1.p

Common Name

PHYPADRAFT_60555

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 341aa MW: 37254.9 Da PI: 6.9653

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_21760V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.9	8e-12	45	84	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 +k+ rr+++NReAAr+sR+RKka++++Le +L + + Pp3c1_21760V3.1.p 45 SKALRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQ 84 7999*************************86555544443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.5E-8	42	89	No hit	No description
SMART	SM00338	6.5E-4	42	102	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.174	44	88	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.73E-7	46	89	No hit	No description
Pfam	PF00170	6.8E-7	46	85	IPR004827	Basic-leucine zipper domain
CDD	cd14708	6.47E-23	46	98	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-34	140	215	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGDNSPRTDT STDVEVDAKL DDGHQQVTGG SITSDHEAGT KNGDSKALRR LAQNREAARK 60 SRLRKKAYVQ QLESSRIKLN QLEQELQRAR QQGLYLGSGS YSGDQIAHSG GGIGGANASN 120 SGAVAFDLEY ARWMEEQQRQ MSELRAALQA HAADTELRGL VDGGMAHYEE IFRLKAVAAK 180 ADVFHVVSGM WKTPAERCFI WMGGFRPSEL LKILLPQIEP LTEQQTMSIC TLQQTSHAAE 240 ENLSSAMESL QQTLADTLSA GSFGSSSNVA NYMTQMAVAM SELAALETFV LEADSLRKQT 300 LQQMHRILTT RQAARGLLAM GDYFARLRAL SSLWSARPRG *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00349	DAP	Transfer from AT3G12250	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024379754.1	0.0	transcription factor TGA6-like isoform X2
Swissprot	Q41558	1e-145	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A2K1L922	0.0	A0A2K1L922_PHYPA; Uncharacterized protein
STRING	PP1S257_96V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP722	16	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-121	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Pp3c1_21760V3.1.p
Entrez Gene	5942631

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]