PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_23930V3.3.p
Common NameHDT1503, PHYPADRAFT_163703
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 345aa    MW: 36802.4 Da    PI: 4.3896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_23930V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014319342123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ykC+ C+++F++  ++ +Hi   H
  Pp3c1_23930V3.3.p 319 YKCTGCDRTFTSELSMSQHIAAkH 342
                        9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.242319344IPR007087Zinc finger, C2H2
SMARTSM003550.0034319342IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280321342IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNSGPVKETL QLLMLSRDHG EQEQYSEQVA SGLQSCSAGV EVPPGKPTSC PPGDGMHLHV  60
SQAALGKSKA KSGKENERVI LKVLVDDSEI VLGTLSEGKC DQMQLDLVFD REFKVSHSSS  120
SSSIYLCGYR TECPEEYDSE DEHEDEEEDD EEDANVPAAV PIEHKAGKVI TEVAGKAATA  180
AANAVQKAVK KQVVQDDVSD EEDDEEDSDD DMDEEDDEDE SDESEEEELK VEAPKAEKKR  240
AAAEPATKVV EKKSKTDASP KPASGSGGKK GVKGGQAMPV ANETPKTPTD KGVKPAKTPK  300
GTPTAPPTTP VSEKKSGQYK CTGCDRTFTS ELSMSQHIAA KHKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.143970.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389191.10.0histone deacetylase HDT2-like isoform X1
TrEMBLA0A2K1L9F10.0A0A2K1L9F1_PHYPA; Uncharacterized protein
STRINGPP1S59_160V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-13histone deacetylase 3
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]