PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_26530V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 243aa    MW: 27920.9 Da    PI: 10.0771
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_26530V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.6e-16135221183
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k+l  sdv+++gr++lpkk ae+h   +  +e++t++l+d  +g+ W+ +++y  ++ks++y+l+    +Fv+ ++L+egD ++ +
  Pp3c1_26530V3.1.p 135 FQKELRASDVSSLGRIILPKKDAERHlpFLAVREGITMSLMDyHTGQYWTARYRYwpNNKSRMYLLE-KIGSFVSFHKLEEGDLLLCY 221
                        99**************************66677999******8899*********877777778777.8**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.19E-21133224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-24133225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-20133218No hitNo description
SMARTSM010191.5E-13135235IPR003340B3 DNA binding domain
PfamPF023628.5E-13135221IPR003340B3 DNA binding domain
PROSITE profilePS508639.079135242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLMQYIRCAP EGQRSELVAA TMMQGMECWG TTPPPKWHYN PNSSTNLAQM NAPQFHPPWN  60
GNWGDRADLV GTGDVPNKAT AYSRALRKSC LLNQRGYLKA RRNRSDSADK LRHHQSRQRR  120
AMSNLECCQG FQFLFQKELR ASDVSSLGRI ILPKKDAERH LPFLAVREGI TMSLMDYHTG  180
QYWTARYRYW PNNKSRMYLL EKIGSFVSFH KLEEGDLLLC YRNPQGAYVS SHGVGNFLAW  240
RV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-30132223293B3 domain-containing transcription factor FUS3
6j9b_D4e-30132223293B3 domain-containing transcription factor FUS3
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.16000.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389244.11e-173uncharacterized protein LOC112288836 isoform X1
RefseqXP_024389252.11e-173uncharacterized protein LOC112288836 isoform X1
RefseqXP_024389262.11e-173uncharacterized protein LOC112288836 isoform X1
RefseqXP_024394984.11e-173uncharacterized protein LOC112291592 isoform X1
TrEMBLA0A2K1L9T30.0A0A2K1L9T3_PHYPA; Uncharacterized protein
STRINGPP1S21_125V6.11e-173(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-31B3 family protein