PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_32440V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 240aa    MW: 26278.8 Da    PI: 7.5701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_32440V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000142648123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ Cg +F++  +L  H+++H
  Pp3c1_32440V3.2.p 26 YMCKVCGNVFTSGQSLGGHMNVH 48
                       89*******************99 PP
2AP248.32.6e-1575122353
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                        ykGVr++k +++WvAeIr p+    +++++lg++ t+ eAa a++ a k++
  Pp3c1_32440V3.2.p  75 YKGVRYRKGQHKWVAEIRPPKG---SRTWWLGTYSTPREAAYAYDVAIKYF 122
                        9******************843...5********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.1E-62452No hitNo description
Gene3DG3DSA:3.30.160.608.5E-52549IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1772653IPR007087Zinc finger, C2H2
PfamPF139127.2E-92650IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.730.101.8E-1874131IPR001471AP2/ERF domain
SMARTSM003808.1E-1774137IPR001471AP2/ERF domain
PROSITE profilePS5103215.76474134IPR001471AP2/ERF domain
PfamPF008471.2E-1074121IPR001471AP2/ERF domain
CDDcd000182.69E-1775131No hitNo description
SuperFamilySSF541711.31E-1475131IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MASSGSDSDG SSDGSPARTS SFSRTYMCKV CGNVFTSGQS LGGHMNVHRK DQRSPRASTA  60
SGAGFTLGGE NTESYKGVRY RKGQHKWVAE IRPPKGSRTW WLGTYSTPRE AAYAYDVAIK  120
YFGSKTSLNF EGHPIYEQIP KIPDDLPDQD FAAKLRKVVK KYGKLAMQSG PGPSTQEPAQ  180
EVDIDDFPDP GPPLSPFYTP FDCEEDVNNY SASAQYGSGH GYSSHQSCNW PYNSDHNFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368470.11e-180ethylene-responsive transcription factor ERF109-like isoform X1
RefseqXP_024368479.11e-180ethylene-responsive transcription factor ERF109-like isoform X2
TrEMBLA0A2K1LAK81e-163A0A2K1LAK8_PHYPA; Uncharacterized protein
STRINGPP1S249_80V6.21e-164(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.19e-15ERF family protein