PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_38440V3.3.p
Common NamePHYPADRAFT_234620
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 364aa    MW: 39685.3 Da    PI: 4.6717
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_38440V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.5e-11176220549
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                        kr rr+ +NR +A+rsRqRK+++++eLe   ++L  eN +L  + 
  Pp3c1_38440V3.3.p 176 KRKRRMSSNRASAQRSRQRKQERLDELEILTAQLRLENATLSRRS 220
                        9**************************************998554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-8172257IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.714174237IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-8176227No hitNo description
PfamPF001701.6E-9176219IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-8176224No hitNo description
CDDcd147021.82E-16177226No hitNo description
PROSITE patternPS000360179194IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MCHGLIEKRP ATVCVPDLLR DLVYQEPGWD GFGDDYPSVY SSVEMPMINE PLLRESSGLS  60
DGALAEIVND YSSVLKKLDS EEVDSADASA FASTGALSTW FDCFKDDICT VTKSTPKESA  120
LLVPKLSPAD GPQDAAGVLQ SVPKSRKSRK SVAGEQGHAQ HDSEMDDVAP ALIDEKRKRR  180
MSSNRASAQR SRQRKQERLD ELEILTAQLR LENATLSRRS QLAEQRAKIF QGERNNLAKM  240
VDGLRKELDA IRQQNVQGSP DCGTESFTSG NHTSGLCNMV GGGEASQVAD VKLETSSKGD  300
LKNVYGNFDA MKRNISSSDL SRGIYGDLYS VLDSIQFDVG IGAEVPDLLK EEWYGSFTEC  360
LNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.148000.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376758.10.0uncharacterized protein LOC112282867
RefseqXP_024376767.10.0uncharacterized protein LOC112282867
TrEMBLA9T0R00.0A9T0R0_PHYPA; Predicted protein
STRINGPP1S147_89V6.30.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]