PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_38820V3.11.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 724aa    MW: 78905.9 Da    PI: 7.9786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_38820V3.11.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16510556455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k+Lq
  Pp3c1_38820V3.11.p 510 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLEEAIEYLKMLQ 556
                         6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-19504566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.324506555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-17509560No hitNo description
Gene3DG3DSA:4.10.280.101.1E-17510564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-14510556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17512561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MSEVLEGEGG GCNARKREWR FSCFEARERS LGRCNRLQQS RGPVQNTLEA GGNDNGSVKM  60
QGQSSKCNKP QWQANYPTTW SSGQGTEDGV TPGKPVTSKS DALLEAAVNE APTEVHPGHH  120
IDVAHDEMVS WLQYPLDDTL ERNYCSDFFG ELPDSHTQLL RESFGHGSTK TARTSYLGSP  180
GNDSVMNRAS TTDTAMLLGA GRAAGFLPQA GAEAFSKVRT IHSLQPSSVT KWQQPHPNSS  240
NGSNMCATAN LATTRAPPSA PPSNPMLPPR TQPMIPNVNT QTPQPNNKPG SMNFSHFSRP  300
AALMKANLHS LTGMNSVPPP SARFKQQQNQ TGKPTVEACT STGSSIAEST TAGQRSSGTQ  360
QELKTQPGVT EREQSNGIKD CRWQSAPSLS PKKDRDYVVS EGDCKKTFND QETYRISGVT  420
SDAVLASSEK GVSHVTQHPD IQEPTITSSS GGCGTSAERP KGFATSNKRK SSEREDTECQ  480
SEDGEDESID TKKPVTGRGS TAKRSRAAEV HNQSERRRRD RINEKMRALQ ELIPNSNKTD  540
KASMLEEAIE YLKMLQLQLQ MISMRTGMTL PPMVVPGGLQ QHMQMPQMPG MPSMGMGMGM  600
VPMGLSHGMM MDMGVTAQGR GVVPMQSHAG PSLNGSMASA SSMVDVHDPR YLASGVIDPY  660
NAYLARQHQP MQMTQPLNID KYNAYLMQQH QLQQQQQHHH HQQQHPQHQQ HQQTSNMNGG  720
PSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1514519ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.47710.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383540.10.0uncharacterized protein LOC112286119
TrEMBLA0A2K1LBG90.0A0A2K1LBG9_PHYPA; Uncharacterized protein
STRINGPP1S147_126V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-37phytochrome interacting factor 3