PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_38880V3.2.p
Common NamePHYPADRAFT_167487
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 788aa    MW: 84935.5 Da    PI: 8.3516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_38880V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-07678719854
                        HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        + r RR+ri +++  L+ l+P+       K++ +++LekA+ Y++ L
  Pp3c1_38880V3.2.p 678 AARVRRERISERLKVLQALIPNG-----DKVDMVTMLEKAISYVQCL 719
                        6799******************5.....5***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.85E-9667724No hitNo description
PROSITE profilePS5088813.827670719IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-12674732IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-10675729IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-9676725IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-5678719IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MNKSPFLLVK SRNYFSSRAC FKLCEMAGPA GALWSTCDPQ PIQQAEIFSG PDNQAGLMSF  60
HVDTPFHWGS EPWALHSRSD DIALMSPSLV HDISPYDSVL HLSGVSGDVQ DLVCGNPKFR  120
QSGQWGQSEF SYSVQDNMQD LLTNQFIPYN TSSLGLNHLS PNFTDLDCAP VYNDTKAFGT  180
VTHNRAVPST NTQSAQHGSS SMVSSNRPIT STASPTTQYG GPRTPSQTTQ YGGSSMVTNS  240
MEMFASAAPQ GIMTTSGLSG GCNSDLMHLP KRQHAHSLPP TTGRDLTASE VVSGNSISNI  300
SGVGSFNSSQ KSSASVMMSP LAASSHMHKA AAVSEELKMA SFNPGPFVPT QKKQQHEQQD  360
TMTSNRIWAD KNNLGKISSS PIPIMGFEQS QQQSMSNSSP VTSLGFEQRQ KMSMGSSPSI  420
TIIGFEQRQK QPMSSSSPIS NMVFEPRQKQ PMSSSSPISN IVFEQRQLPT VGSSPPISIS  480
GFEPKKQPSL SNSPPLSNLG FEQRLQPMSN ASPISNLPFE QQRQQATMSN TRSAEPDSVE  540
STTKWPLRMD GAIGGCAGLP SSQKAPVIMQ PETGTMKCPI PRTMPSNAKA CPAVQNANSV  600
NKRPLTVDDK DQTGSMNKKS MQKFLGPQGC SRLESISALA HQKVSQSTTS GRALGPALNT  660
NLKPRARQGS ANDPQSIAAR VRRERISERL KVLQALIPNG DKVDMVTMLE KAISYVQCLE  720
FQIKMLKNDS LWPKALGPLP NTLQELLELA GPEFAGIDGK NTEESSEKPK KSALEVIELD  780
GNQPSAD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.10460.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563930.0EF156393.1 Physcomitrella patens Rhd6-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396629.10.0uncharacterized protein LOC112292412 isoform X1
TrEMBLA9T0T30.0A9T0T3_PHYPA; Predicted protein
STRINGPP1S147_136V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.15e-26ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]