PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_38880V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 763aa    MW: 81984 Da    PI: 7.8042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_38880V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-07653694854
                        HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        + r RR+ri +++  L+ l+P+       K++ +++LekA+ Y++ L
  Pp3c1_38880V3.3.p 653 AARVRRERISERLKVLQALIPNG-----DKVDMVTMLEKAISYVQCL 694
                        6799******************5.....5***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.55E-9642699No hitNo description
PROSITE profilePS5088813.827645694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-12649707IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-10650704IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-9651700IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-5653694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MAGPAGALWS TCDPQPIQQA EIFSGPDNQA GLMSFHVDTP FHWGSEPWAL HSRSDDIALM  60
SPSLVHDISP YDSVLHLSGV SGDVQDLVCG NPKFRQSGQW GQSEFSYSVQ DNMQDLLTNQ  120
FIPYNTSSLG LNHLSPNFTD LDCAPVYNDT KAFGTVTHNR AVPSTNTQSA QHGSSSMVSS  180
NRPITSTASP TTQYGGPRTP SQTTQYGGSS MVTNSMEMFA SAAPQGIMTT SGLSGGCNSD  240
LMHLPKRQHA HSLPPTTGRD LTASEVVSGN SISNISGVGS FNSSQKSSAS VMMSPLAASS  300
HMHKAAAVSE ELKMASFNPG PFVPTQKKQQ HEQQDTMTSN RIWADKNNLG KISSSPIPIM  360
GFEQSQQQSM SNSSPVTSLG FEQRQKMSMG SSPSITIIGF EQRQKQPMSS SSPISNMVFE  420
PRQKQPMSSS SPISNIVFEQ RQLPTVGSSP PISISGFEPK KQPSLSNSPP LSNLGFEQRL  480
QPMSNASPIS NLPFEQQRQQ ATMSNTRSAE PDSVESTTKW PLRMDGAIGG CAGLPSSQKA  540
PVIMQPETGT MKCPIPRTMP SNAKACPAVQ NANSVNKRPL TVDDKDQTGS MNKKSMQKFL  600
GPQGCSRLES ISALAHQKVS QSTTSGRALG PALNTNLKPR ARQGSANDPQ SIAARVRRER  660
ISERLKVLQA LIPNGDKVDM VTMLEKAISY VQCLEFQIKM LKNDSLWPKA LGPLPNTLQE  720
LLELAGPEFA GIDGKNTEES SEKPKKSALE VIELDGNQPS AD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.10460.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563930.0EF156393.1 Physcomitrella patens Rhd6-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396639.10.0uncharacterized protein LOC112292412 isoform X2
RefseqXP_024396647.10.0uncharacterized protein LOC112292412 isoform X2
TrEMBLA5Y5A60.0A5Y5A6_PHYPA; Rhd6-like 1
STRINGPP1S147_136V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-26ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Menand B, et al.
    An ancient mechanism controls the development of cells with a rooting function in land plants.
    Science, 2007. 316(5830): p. 1477-80
    [PMID:17556585]