PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_39760V3.1.p

Common Name

PHYPADRAFT_191533, PPMA11

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 397aa MW: 44472.9 Da PI: 8.5937

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_39760V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.4	4e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++gkl ys+ Pp3c1_39760V3.1.p 9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDVDVALIMFSPSGKLTQYSN 59 68***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.716	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.2E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.11E-31	2	87	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.55E-39	2	71	No hit	No description
PRINTS	PR00404	1.5E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-26	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	7.598	138	240	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD VDVALIMFSP SGKLTQYSNC 60 SIEDVIGRFA NLPMHERNKS LEDMLTRFAN FHMVHDRSKY TRKPENLEYL HRALKNSNGE 120 KDLAANHQLL TGSKSYEIGL LQEELKKSQQ EKVLVQQRAR LYLADENLLQ NITSVQQLAN 180 METELEQALE RVRARKSYVS NAYQAASAMQ RQMMALRQQQ QADIAGAPSL FLQWNMPERG 240 EPTLQDLMEQ QSNPSRAIAP TQTTRELVVS NGKASPTGNH FFPGVASQPN LHMGEMSQLM 300 ASNRGLTMHN LELEQPAAQY DDSGKKTKLD TNMGLASSSS SDVAAEATAE TFTNQSVQAH 360 GNTGGSNWHQ AHHHAQAYTS PQYSNGFFNQ NADAWK*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD VDVALIMFSP SGKLTQYSNC  60
SIEDVIGRFA NLPMHERNKS LEDMLTRFAN FHMVHDRSKY TRKPENLEYL HRALKNSNGE  120
KDLAANHQLL TGSKSYEIGL LQEELKKSQQ EKVLVQQRAR LYLADENLLQ NITSVQQLAN  180
METELEQALE RVRARKSYVS NAYQAASAMQ RQMMALRQQQ QADIAGAPSL FLQWNMPERG  240
EPTLQDLMEQ QSNPSRAIAP TQTTRELVVS NGKASPTGNH FFPGVASQPN LHMGEMSQLM  300
ASNRGLTMHN LELEQPAAQY DDSGKKTKLD TNMGLASSSS SDVAAEATAE TFTNQSVQAH  360
GNTGGSNWHQ AHHHAQAYTS PQYSNGFFNQ NADAWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	4e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	4e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	4e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	4e-17	2	69	1	68	Myocyte-specific enhancer factor 2A
6byy_A	4e-17	1	85	1	85	MEF2 CHIMERA
6byy_B	4e-17	1	85	1	85	MEF2 CHIMERA
6byy_C	4e-17	1	85	1	85	MEF2 CHIMERA
6byy_D	4e-17	1	85	1	85	MEF2 CHIMERA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.13248	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ334470	1e-112	GQ334470.1 Funaria hygrometrica MIKC* MADS-box transcription factor (MADS11) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356338.1	0.0	floral homeotic protein AGAMOUS-like isoform X3
TrEMBL	A0A2K1LBK2	0.0	A0A2K1LBK2_PHYPA; Uncharacterized protein
STRING	PP1S163_69V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	3e-38	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Pp3c1_39760V3.1.p
Entrez Gene	5936715

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]