PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_39960V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family S1Fa-like
Protein Properties Length: 89aa    MW: 9346.99 Da    PI: 10.3805
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_39960V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA100.21.3e-312387569
               S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPG 69
                       ++++ G+nPGl+vl+vv g ll+f +gny ly yaqknlP ++kkPvskkklk+eklk Gv + G
  Pp3c1_39960V3.2.p 23 IEQSTGINPGLVVLIVVLGALLIFGLGNYFLYQYAQKNLPVKRKKPVSKKKLKKEKLKGGVRPAG 87
                       34569********************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.9E-292587IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGAIASDDSA DVDPSAFMGQ GSIEQSTGIN PGLVVLIVVL GALLIFGLGN YFLYQYAQKN  60
LPVKRKKPVS KKKLKKEKLK GGVRPAGD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16374KRKKPVSKKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393659.12e-18DNA-binding protein S1FA-like
TrEMBLA0A2K1LBK94e-55A0A2K1LBK9_PHYPA; Uncharacterized protein
STRINGPP1S163_90V6.17e-56(Physcomitrella patens)