PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_40230V3.1.p
Common NamePHYPADRAFT_140129, WRKY9
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 397aa    MW: 43237.9 Da    PI: 10.2574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_40230V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.8e-32326383359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers edp+++++tYegeHnh+
  Pp3c1_40230V3.1.p 326 DDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERSMEDPTMLIVTYEGEHNHP 383
                        99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-16277322IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.0E-34312384IPR003657WRKY domain
PROSITE profilePS5081130.997319385IPR003657WRKY domain
SuperFamilySSF1182902.48E-27322384IPR003657WRKY domain
SMARTSM007742.6E-38324384IPR003657WRKY domain
PfamPF031062.7E-27326383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGAMEVLDYS ITLGKRDRDY EVKEAARMGI ESARRLLQSL THAQPAVVDE ECDTIATAAI  60
SKFQKVVSLL GRTGHARFRR RARDSTVTGC AGVFLESSNF FTDNAQVLEP RDRPVSSGHA  120
SPSPSPFTPI ASSKPPQSPE LQRILYQVFP QSSPTSAGEA SVPSGSTHSI LHPTPKAHHL  180
LHSVQQGPMQ QSLPEHILRP LAAGYRPVLP PNLFNNKHDV SNKGPSPGNS SLNSGPPESA  240
TTVSFSNMSV DRISQQTGKS LEQPSPLPPR PQASNSRKRC SGKSDENGAT CAILGRCHCS  300
KRRKLRLKRT IKVRAISSKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSIRGCPARK  360
HVERSMEDPT MLIVTYEGEH NHPQLSANGG LTVQSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-213203821071WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.22000.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896280.0DQ889628.1 Physcomitrella patens WRKY transcription factor 9 (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385743.10.0WRKY transcription factor WRKY51-like
TrEMBLA9T4I70.0A9T4I7_PHYPA; Transcription factor WRKY9
STRINGPP1S163_112V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.19e-50WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]