PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_40330V3.4.p
Common NamePHYPADRAFT_168020
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 182aa    MW: 21357.8 Da    PI: 10.6208
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_40330V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.65.6e-0754101447
                AP2   4 kGVrwdkkrgrWvAeIrdpse...ng..krkrfslgkfgtaeeAakaai 47 
                        kGV +++ +gr+ +eIr  +e   +   ++ +++lg+f t ++Aa+a +
  Pp3c1_40330V3.4.p  54 KGVIRRP-NGRFSCEIRIAKEmvtDEsyRKGKVWLGTFRTRFQAARALD 101
                        9**9899.8*********777786448666****************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.85352118IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-753108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-1454112IPR001471AP2/ERF domain
SMARTSM003800.004854122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDSQNDFQTI FNSLPELDPD FSLPELSVTI LTRRDHWKVY CILYRLRKAC KVSKGVIRRP  60
NGRFSCEIRI AKEMVTDESY RKGKVWLGTF RTRFQAARAL DVGKLFFSRK KRKNYHNPET  120
EAKLLIFKEN PGVETMKEMV EYVQELAKLY GENGTVPPSD WRIKRVPRRS RQKKPRLSNC  180
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173RRSRQKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.17670.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372405.11e-133uncharacterized protein LOC112280794
RefseqXP_024372410.11e-133uncharacterized protein LOC112280794
RefseqXP_024372416.11e-133uncharacterized protein LOC112280794
TrEMBLA9T4J21e-132A9T4J2_PHYPA; Predicted protein
STRINGPP1S163_124V6.31e-133(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-07ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]