PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_40750V3.1.p
Common NamePHYPADRAFT_232610
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 347aa    MW: 37619 Da    PI: 6.7101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_40750V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.36.6e-16232268135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg+
  Pp3c1_40750V3.1.p 232 CVHCGIGErsTPMMRRGPAGPRTLCNACGLMWANKGV 268
                        ****866666************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.15190125IPR010399Tify domain
SMARTSM009791.0E-1090125IPR010399Tify domain
PfamPF062001.4E-1392124IPR010399Tify domain
PfamPF062032.1E-15157199IPR010402CCT domain
PROSITE profilePS5101713.225157199IPR010402CCT domain
SMARTSM004015.1E-13226279IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.972226274IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12228276No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15231273IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.38E-15231274No hitNo description
PROSITE patternPS003440232259IPR000679Zinc finger, GATA-type
PfamPF003201.1E-13232268IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MREMHVHGHG ESEGHGQARG DQQVQDHLEV DQVHNHHGHH GHGMHNKEEN GVEVEEHDDD  60
AGDEEGLDEA DMHSDGGGNP GDGPTPLAVR TQGSTQLTLS YQGEVYVFDT VPPKKVQAVL  120
LLLGGREIPP GMSGVNMFSH HHKGLTELPA RMNMPQRLAS LTRFREKRKE RCYDKKIRYT  180
VRKEVAQRMQ RKKGQFASSR PTQEEGAPVA NWDGTLAPGQ TVAPGVHPEV TCVHCGIGER  240
STPMMRRGPA GPRTLCNACG LMWANKGVLR DLSKNLSITA GGQQQLMLHP QQILQQQQHQ  300
VAGLQGSVDN APQGVDVQGS QQREGDVQKD MASIVTADGG PVLAAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.31340.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380115.10.0GATA transcription factor 24-like
SwissprotQ8H1G05e-75GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2K1LBQ70.0A0A2K1LBQ7_PHYPA; Uncharacterized protein
STRINGPP1S111_5V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-75ZIM-LIKE 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]