PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_41700V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 613aa MW: 68509.1 Da PI: 9.4811

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_41700V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	550	571	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg++F +++L +H+r H Pp3c1_41700V3.3.p 550 ECPHCGRTF-KPDSLLVHMRGcH 571 5******.********955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13913	3.7E-8	548	570	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MYSPSSKSMA LEEEYSIVQV VYQLNWDGKF EDPHMIEVQY PPGQDGVRLR GKPAENLAKC 60 QNKEKQGSFK TQVSRGCGLD LSNQSDHRSY RIMWNGNVAC ANRGNSLNAA KQSRSARRSD 120 DSKQEVIDVE RSDFCLSSSD NEISPRLLKM VNCKPVKDTL AKIRQSSTLQ GVQTLPYDSL 180 PSSIEPPSTP GSAKRLWKRE IRKSLFGMRN TNLSPPSERS GEYALLSPEA SHVECMHDDI 240 SFWSGCRSKS LSTLHLSEIK EEHEENDKQE IDQSTSNIIR SLWSRWTRGS SKGRRSLGRT 300 CEVSLIHPSD AAKTLKTKTH PQANVLRTCS NSPIKEKIST HVSRSCQETR HLPVLHRKSS 360 RTPEENQIPR KKELAHCQIS KAKILTKITL SRTEVNFTIA DEEAPSNVNP HNNPRELNTK 420 EAVLSVPSLQ SEPDSSEIDI DKGSSEKDAE TPTSAVTRVL VKSAINSNGP PSVKKTTSPM 480 PLPPGFHKGT NDTKPVQTPR KAIGKKCINF PENHEKSFIH GLTTSDWEKA LQDPETDCLP 540 PPNFGQFLQE CPHCGRTFKP DSLLVHMRGC HPPEYARAFS ARASPHQTRS QGNAPCKRRT 600 SPRRERLKQM VS*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MYSPSSKSMA LEEEYSIVQV VYQLNWDGKF EDPHMIEVQY PPGQDGVRLR GKPAENLAKC  60
QNKEKQGSFK TQVSRGCGLD LSNQSDHRSY RIMWNGNVAC ANRGNSLNAA KQSRSARRSD  120
DSKQEVIDVE RSDFCLSSSD NEISPRLLKM VNCKPVKDTL AKIRQSSTLQ GVQTLPYDSL  180
PSSIEPPSTP GSAKRLWKRE IRKSLFGMRN TNLSPPSERS GEYALLSPEA SHVECMHDDI  240
SFWSGCRSKS LSTLHLSEIK EEHEENDKQE IDQSTSNIIR SLWSRWTRGS SKGRRSLGRT  300
CEVSLIHPSD AAKTLKTKTH PQANVLRTCS NSPIKEKIST HVSRSCQETR HLPVLHRKSS  360
RTPEENQIPR KKELAHCQIS KAKILTKITL SRTEVNFTIA DEEAPSNVNP HNNPRELNTK  420
EAVLSVPSLQ SEPDSSEIDI DKGSSEKDAE TPTSAVTRVL VKSAINSNGP PSVKKTTSPM  480
PLPPGFHKGT NDTKPVQTPR KAIGKKCINF PENHEKSFIH GLTTSDWEKA LQDPETDCLP  540
PPNFGQFLQE CPHCGRTFKP DSLLVHMRGC HPPEYARAFS ARASPHQTRS QGNAPCKRRT  600
SPRRERLKQM VS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024398134.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398207.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398286.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398366.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398442.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398529.1	0.0	uncharacterized protein LOC112293172
Refseq	XP_024398612.1	0.0	uncharacterized protein LOC112293172
TrEMBL	A0A2K1LBT8	0.0	A0A2K1LBT8_PHYPA; Uncharacterized protein
STRING	PP1S111_119V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c1_41700V3.3.p