PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_5010V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 255aa    MW: 28077.4 Da    PI: 8.081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_5010V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-1775123355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ykGVr +  +grWv eIr p +   +k+++lg++ +aeeAa a++aa ++l+g
  Pp3c1_5010V3.1.p  75 YKGVRMRT-WGRWVTEIRQPQT---KKSIWLGSYRSAEEAAHAYDAAVLCLRG 123
                       9****998.**********943...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.19374131IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2074133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-2974133IPR001471AP2/ERF domain
SMARTSM003802.8E-3074137IPR001471AP2/ERF domain
CDDcd000181.18E-2675132No hitNo description
PfamPF008473.4E-1175123IPR001471AP2/ERF domain
PRINTSPR003677.9E-117586IPR001471AP2/ERF domain
PRINTSPR003677.9E-11113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MHASFMINVA VSNSGTKLGV FQDQESRRLG SNWQVPVGKL RPPKSFGSPR ESAHMSGSHA  60
ESGSSRRKHK TVRLYKGVRM RTWGRWVTEI RQPQTKKSIW LGSYRSAEEA AHAYDAAVLC  120
LRGPTAKLNF PDERPAIPPG SPGKYSIREV QAAAAGAAAA SAGRRFSYSE FMSATTPPES  180
IDPAPEHINC PSDSRGTSPL PADRIYPCEF DEDPLQATWE VPDEMMVPLT PREVLYDSDS  240
YDGFPRDDLP PWNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-12751331574Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359814.11e-52ethylene-responsive transcription factor ERF017-like
TrEMBLA0A2K1L6Y60.0A0A2K1L6Y6_PHYPA; Uncharacterized protein
STRINGPP1S45_159V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.11e-18related to AP2 9