PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_7300V3.7.p
Common NamePHYPADRAFT_162038
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 544aa    MW: 60216 Da    PI: 9.804
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_7300V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.82.8e-093493981463
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       R +A+rsR RK+++i eLe  v +Le+e  +L  ++  +  e a+l +e+
  Pp3c1_7300V3.7.p 349 RQSAQRSRVRKLQYISELEMNVSVLESEVASLSPKVGYYDHERARLSAEN 398
                       89*******************************99999999999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-4340400IPR004827Basic-leucine zipper domain
CDDcd147032.52E-18347392No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-10349406No hitNo description
PfamPF001703.6E-7349397IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-7349394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEESKQPGSK AMQGFPRMDN VSTGKYGDRS VNWAHPMNNS THLPPKSPHG GYSMFSSSSL  60
FENNGGLNFP PCQPIRGGEH RRSPSAGYVP QGQPTWQSVR LASSDGIVVK KCSHRRSSSD  120
SVAFVDNSYQ CMNYLEHVTE EDEFVFQEPP ISAYRPAHRK GLSADYDSYS SISPTGNQNP  180
QYKLLETHRL YPGKSMRGDH NINRLGRDYV PRIRDSEPFQ RQQSRHENVA AYNRVGSNLA  240
KSVPQEDSRN LGKAKKHVTL AIPNLKSDGT SSSKGRVHNL GTNSTLENRS TASESNSLSD  300
DSNDDVRPKS YEKLRGDSEL RTEGDGNAPA LAHDDCTSSE QLDPKKAKRQ SAQRSRVRKL  360
QYISELEMNV SVLESEVASL SPKVGYYDHE RARLSAENVL LKQKLAALTK SQRLKEAHSE  420
SLKSEAHRLL QLYNQQQQQT QHHAERRSLS ADILDLQLMR FSQLDIGPQI PKPKSPNGYT  480
SVVRPSSGRP SLYPSKVISP PHDRIISRPS SHTIPPSCMA PGGKTLAGGM MGGSSTSFMV  540
HNL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.61260.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387446.10.0uncharacterized protein LOC112287962 isoform X2
TrEMBLA0A2K1L7770.0A0A2K1L777_PHYPA; Uncharacterized protein
STRINGPP1S38_310V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-20bZIP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]