PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_8740V3.2.p
Common NamePHYPADRAFT_161996
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 345aa    MW: 38309.4 Da    PI: 8.4994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_8740V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09145190454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h  rEr+RRd++ s+f+ L +llP+      +K + ++i+   ++Y+++L
  Pp3c1_8740V3.2.p 145 EHILRERQRRDDMTSKFAVLESLLPTG-----TKRDRSAIVDDSIQYVNNL 190
                       6999**********************8.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.6E-14138215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.319141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-13141212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-7145190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-8146195No hitNo description
SMARTSM003531.4E-7147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMHQGFGQNQ CGSLESLVGE SSSYVGLPSV GIYQSDIDRD IFFDSLPPVD DHKNPHNYAP  60
VSTVPHAPIS SLEFCSSHVV GSLSASSQPQ VMGERWNIDE APTSTRVLKH ERSSDDQIST  120
QGRKRLAKSD RTVASKCKRP NEQSEHILRE RQRRDDMTSK FAVLESLLPT GTKRDRSAIV  180
DDSIQYVNNL HHRIKELQNR KVELNQSATC LQKVVASRRR KSFGGLQPTS PDNVNEKKAA  240
VQRLPISPQE LSRIHTLLRS SLEKMEVHAD LPNQVVIEMV FHPQPRLQSN ILQCLESLNL  300
DVMQCSITKI AHRLICVVTA QPQETKTPTS GIVGALKSAL QGSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221SRRRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.24050.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393784.10.0transcription factor EGL1-like
TrEMBLA0A2K1L7G60.0A0A2K1L7G6_PHYPA; Uncharacterized protein
STRINGPP1S38_148V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.34e-13bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]