PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_8740V3.3.p
Common NamePHYPADRAFT_161996
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 399aa    MW: 44063.7 Da    PI: 7.3981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_8740V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09199244454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h  rEr+RRd++ s+f+ L +llP+      +K + ++i+   ++Y+++L
  Pp3c1_8740V3.3.p 199 EHILRERQRRDDMTSKFAVLESLLPTG-----TKRDRSAIVDDSIQYVNNL 244
                       6999**********************8.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-13192269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.319195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-13195266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-7199244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-9200249No hitNo description
SMARTSM003531.4E-7201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MITLENTGLN WGGFGFDSHS RDKLGVGLGA ASLEPAGDNV ELQQQLNDFI STSYMMHQGF  60
GQNQCGSLES LVGESSSYVG LPSVGIYQSD IDRDIFFDSL PPVDDHKNPH NYAPVSTVPH  120
APISSLEFCS SHVVGSLSAS SQPQVMGERW NIDEAPTSTR VLKHERSSDD QISTQGRKRL  180
AKSDRTVASK CKRPNEQSEH ILRERQRRDD MTSKFAVLES LLPTGTKRDR SAIVDDSIQY  240
VNNLHHRIKE LQNRKVELNQ SATCLQKVVA SRRRKSFGGL QPTSPDNVNE KKAAVQRLPI  300
SPQELSRIHT LLRSSLEKME VHADLPNQVV IEMVFHPQPR LQSNILQCLE SLNLDVMQCS  360
ITKIAHRLIC VVTAQPQETK TPTSGIVGAL KSALQGSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275SRRRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.24050.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393784.10.0transcription factor EGL1-like
TrEMBLA0A2K1L7G60.0A0A2K1L7G6_PHYPA; Uncharacterized protein
STRINGPP1S38_148V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.35e-13bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]