PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_11430V3.2.p
Common NamePHYPADRAFT_88203
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 515aa    MW: 56493.9 Da    PI: 7.986
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_11430V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.6e-32294349156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pp3c20_11430V3.2.p 294 KARRCWSPELHRRFVSALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 349
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.889291351IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-29292352IPR009057Homeodomain-like
SuperFamilySSF466891.77E-17292352IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26294349IPR006447Myb domain, plants
PfamPF002493.0E-7296347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGSPANLALG PQVSTITSTI ETALNCTVSA DGLEADEIQK IAAHLRALQE ERGKIEAFKR  60
ELPLCMQLLD EAIETAINKV MVDQCSPTAS LQTSVLDAQD SDYERPKRTL VLENFMPLKR  120
RWEKQLKEKI FQNDAGNNSQ QHEDKVVIGR PAWMKETQLW TKQSESIDYE ASPSRGSRRQ  180
VEFKCSEQDR PLTSSRLLLN SKDRQGGAFV PFNREKQLPS PPFSSQSTGP ASDAAGFSTS  240
SAVRTPSRMG HTIESFDIGR VNGNVHVRDH SSDARNSIDH SVQTRTGANQ PQRKARRCWS  300
PELHRRFVSA LQQLGGSQVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSPSPPSP  360
SHAPQLVVVG WVRPEFTAVE GAASQASTGD NPLPGISNEC VPSQSTGQPQ KQSPPNFQKH  420
LPAVSTSQTS LRGPSPVGVD SPHSSSDSYI DESDDEQDGN CTSSGENGRQ YECNEKPLQS  480
ARESKGSTTC LADIDATINP QMKLRILRKT KAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-15294347154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-15294347154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-15294347154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-15294347154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357510.10.0transcription factor NIGT1-like isoform X2
TrEMBLA9T5480.0A9T548_PHYPA; Predicted protein
STRINGPP1S166_107V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-53G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]