PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_11890V3.1.p

Common Name

PHYPADRAFT_168101

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 371aa MW: 41131.3 Da PI: 6.0959

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_11890V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	73	126	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt +LH++Fv ave+LGG+ekAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Pp3c20_11890V3.1.p 73 PRLRWTADLHRCFVVAVERLGGQEKATPKMVLQLMDVKGLTIAHVKSHLQMYRS 126 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.68	69	129	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-30	69	127	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-15	71	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-23	73	126	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-6	74	125	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDFLGKQSFD GTEEDRDLDG GARTGASLRG SSDDLSSESN TTSTTNAQDP SSNVAKKLGS 60 RGKVRQYVRS RLPRLRWTAD LHRCFVVAVE RLGGQEKATP KMVLQLMDVK GLTIAHVKSH 120 LQMYRSLKND ESVQSGNPTV ASPSPTVDSR PPTQLMKHLD GAGDAGIDSP SLRGDWHYLL 180 ETDFKKQQET DDDHFGQPFP GSVSRSLDSA SNYNKIYNRF IGNAVNERSH DLFWPKAQRP 240 SKHITVDRYR YEHDDESNWR QDANSTEPDS LLSLSHLHSR PSLSTTSQKS IILNHRSTSV 300 ATEQVSFVDF LSSSQSRNTE QVATPADGLG LDLTMSTGSA IEDPEEVSLS FQRNKVEELD 360 LMLDLTMSTR *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDFLGKQSFD GTEEDRDLDG GARTGASLRG SSDDLSSESN TTSTTNAQDP SSNVAKKLGS  60
RGKVRQYVRS RLPRLRWTAD LHRCFVVAVE RLGGQEKATP KMVLQLMDVK GLTIAHVKSH  120
LQMYRSLKND ESVQSGNPTV ASPSPTVDSR PPTQLMKHLD GAGDAGIDSP SLRGDWHYLL  180
ETDFKKQQET DDDHFGQPFP GSVSRSLDSA SNYNKIYNRF IGNAVNERSH DLFWPKAQRP  240
SKHITVDRYR YEHDDESNWR QDANSTEPDS LLSLSHLHSR PSLSTTSQKS IILNHRSTSV  300
ATEQVSFVDF LSSSQSRNTE QVATPADGLG LDLTMSTGSA IEDPEEVSLS FQRNKVEELD  360
LMLDLTMSTR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	74	128	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	74	128	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	74	128	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	74	128	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	74	128	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	74	128	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	74	128	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	74	128	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	74	128	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	74	128	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	74	128	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	74	128	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11596	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358541.1	0.0	putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A2K1IUY9	0.0	A0A2K1IUY9_PHYPA; Uncharacterized protein
TrEMBL	A9T530	0.0	A9T530_PHYPA; Predicted protein
STRING	PP1S166_69V6.1	5e-80	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	4e-30	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c20_11890V3.1.p
Entrez Gene	5936913

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]