PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_11890V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 446aa    MW: 49834.2 Da    PI: 6.2839
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_11890V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.6e-3273126255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWt +LH++Fv ave+LGG+ekAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Pp3c20_11890V3.2.p  73 PRLRWTADLHRCFVVAVERLGGQEKATPKMVLQLMDVKGLTIAHVKSHLQMYRS 126
                         8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-3069127IPR009057Homeodomain-like
PROSITE profilePS5129410.6869129IPR017930Myb domain
SuperFamilySSF466896.45E-1571128IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-2373126IPR006447Myb domain, plants
PfamPF002492.1E-674125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDFLGKQSFD GTEEDRDLDG GARTGASLRG SSDDLSSESN TTSTTNAQDP SSNVAKKLGS  60
RGKVRQYVRS RLPRLRWTAD LHRCFVVAVE RLGGQEKATP KMVLQLMDVK GLTIAHVKSH  120
LQMYRSLKND ESVQSDLCNW RGGQLQHHSD RWLQSTLGYN RISKPLILEQ STNKPKGLSS  180
ANEILETEWQ MYKQESDSRI ALMMLMEGRA GNPTVASPSP TVDSRPPTQL MKHLDGAGDA  240
GIDSPSLRGD WHYLLETDFK KQQETDDDHF GQPFPGSVSR SLDSASNYNK IYNRFIGNAV  300
NERSHDLFWP KAQRPSKHIT VDRYRYEHDD ESNWRQDANS TEPDSLLSLS HLHSRPSLST  360
TSQKSIILNH RSTSVATEQV SFVDFLSSSQ SRNTEQVATP ADGLGLDLTM STGSAIEDPE  420
EVSLSFQRNK VEELDLMLDL TMSTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.115960.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358540.10.0uncharacterized protein LOC112273692 isoform X1
TrEMBLA0A2K1IUY91e-160A0A2K1IUY9_PHYPA; Uncharacterized protein
TrEMBLA9T5301e-158A9T530_PHYPA; Predicted protein
STRINGPP1S166_69V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-29G2-like family protein