PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_12980V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 401aa    MW: 43816.1 Da    PI: 7.8395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_12980V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09176222455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h +rEr+RRd++  +++ L +llP+a      K + a ++e A+ ++k+Lq
  Pp3c20_12980V3.2.p 176 EHIIRERQRRDDMAAKYSILESLLPPA-----AKRERAVVVEDAMSFVKNLQ 222
                         699***********************8.....7*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.858172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-8175240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10175243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-7177226No hitNo description
SMARTSM003532.3E-5178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDIELDDFFQ WQMPFSALLA DIEIPESSID DILDIELPDI IQDSHTLSAP VSADAESISP  60
NSSFGSDKQT SSPLWSCDIP APASNCKNLL PAVNTPSNSF PSISDPVGSP QSSTVPLPGA  120
QSLTVSHEAP VTPPAAKPKR TRAVRASTKK STKAKPKPEA AVAEPPKESR LPTQAEHIIR  180
ERQRRDDMAA KYSILESLLP PAAKRERAVV VEDAMSFVKN LQHKKSELLK RRAKLKLAAQ  240
HQSVNGLSPR HDKGKWLKTA HDSSGVITTS CVNQSTENCR TDSPISSSIM VRDLMVKPIT  300
NASEDLNIDA KPVHIYVHFS EKEIVIEMVW SQLLRNFHSF LLQAVESFGL DVTRCSLQRL  360
TRGVVQCIIT CTKSPALTTP SEIKSSGTLI EALRKVLIQP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358285.10.0uncharacterized protein LOC112273578
TrEMBLA0A2K1IV270.0A0A2K1IV27_PHYPA; Uncharacterized protein
STRINGPP1S94_148V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-06bHLH family protein