PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_15580V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 509aa MW: 57269.1 Da PI: 7.7126

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_15580V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.5	8.1e-09	4	63	1	60
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 +W+ qe aL+e + + ++g + +W ev+k++re+gf+rs + C+ +w l+++ Pp3c20_15580V3.2.p 4 QWSWQESIALVEEHIALRAKGSKGHTASEHWNEVAKRLREKGFNRSHESCNRRWYRLEQY 63 6*****************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.213	1	61	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MAKQWSWQES IALVEEHIAL RAKGSKGHTA SEHWNEVAKR LREKGFNRSH ESCNRRWYRL 60 EQYRVQIISF NMQEDNHNNY WDLTREQRLE CRSKWPQLPL GDGFDKKIFD CLESFSHQNE 120 KKESVSNRMN VSPTSFEDKE VACTELNVEL TRESVPLPAP PSAPSVSSTS TSAPSSHPLV 180 AVDTVSPSAE SKPQEESEKQ VKTSWPVPSE QQPVSSQETF DGFKLQAREL RRRRAAELRR 240 NNRTVPYNSS HSTFVKTSQP PPHPTPENSS LITEPTTFDS IKVAPPPDFT NKTTENPNKI 300 PSSMKPWFPF KRPNPFANAC KMDDTQMPQN SPQQQPIGSH LNNSLSQNAI PGENYAKKPH 360 HADQDTHKPV LQSVNSHLPL LHSGDSQMSN SGSKEELVQM IMGVHQGSFH NTNNCEQQLH 420 KNLVVERVPL FHRGMNPGHQ DNVEQCSPAV SLLGQTIGGL GAQLGTMVKL MQSKHAAEQE 480 FRDKMLLFME CMVVSLHGMA QASARPNV*

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MAKQWSWQES IALVEEHIAL RAKGSKGHTA SEHWNEVAKR LREKGFNRSH ESCNRRWYRL  60
EQYRVQIISF NMQEDNHNNY WDLTREQRLE CRSKWPQLPL GDGFDKKIFD CLESFSHQNE  120
KKESVSNRMN VSPTSFEDKE VACTELNVEL TRESVPLPAP PSAPSVSSTS TSAPSSHPLV  180
AVDTVSPSAE SKPQEESEKQ VKTSWPVPSE QQPVSSQETF DGFKLQAREL RRRRAAELRR  240
NNRTVPYNSS HSTFVKTSQP PPHPTPENSS LITEPTTFDS IKVAPPPDFT NKTTENPNKI  300
PSSMKPWFPF KRPNPFANAC KMDDTQMPQN SPQQQPIGSH LNNSLSQNAI PGENYAKKPH  360
HADQDTHKPV LQSVNSHLPL LHSGDSQMSN SGSKEELVQM IMGVHQGSFH NTNNCEQQLH  420
KNLVVERVPL FHRGMNPGHQ DNVEQCSPAV SLLGQTIGGL GAQLGTMVKL MQSKHAAEQE  480
FRDKMLLFME CMVVSLHGMA QASARPNV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024357182.1	0.0	uncharacterized protein LOC112273067
Refseq	XP_024357183.1	0.0	uncharacterized protein LOC112273067
TrEMBL	A0A2K1IVA5	0.0	A0A2K1IVA5_PHYPA; Uncharacterized protein
STRING	PP1S44_57V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c20_15580V3.2.p