PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_18730V3.1.p
Common NamePHYPADRAFT_172979
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 407aa    MW: 46738.9 Da    PI: 7.9196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_18730V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05246270223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         +C+   C+k F+++ +L+rH +  H
  Pp3c20_18730V3.1.p 246 VCKiaECNKAFKSSKTLRRHVQQkH 270
                         79999***************98766 PP
2zf-C2H213.90.00016319339323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         Cp C   F r+++++rH r +
  Pp3c20_18730V3.1.p 319 CPFCQIKFARQHEMERHRRIC 339
                         *******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.45245275IPR007087Zinc finger, C2H2
SMARTSM003550.0045245270IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-4246267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280247270IPR007087Zinc finger, C2H2
SMARTSM0035533317337IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-4319341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNGLKLVLPQ VEDSYSYLMK AASQALPWCS GLRSEVAKKW QFMLNKFGTQ AEAGCKDTAE  60
IFAEGGVLVV RSQSCPWSSA NIHHTNQCIA SDASQFYHIL ENSFYCDTTH ADRQDLRCKY  120
CATLENELTN SKEMNKWKWA GESCEDANVK QANRYFEPGT TMPLIDHDNQ KQKYGQDEWQ  180
NGRALVLLKL KELTMRATQA EQRVHELEQL LRDHALVGLD DTWGDSEMVT SASTYNCLNK  240
RSEMLVCKIA ECNKAFKSSK TLRRHVQQKH SDTTRFFMCN QLTVNGEVCH FETIHSGVLS  300
YHRKYSLAHH RREDWHIFCP FCQIKFARQH EMERHRRICK FRPAPSRPSP HSKGSSVQST  360
VTEMPSESCL NHPLQPWGFV VPDPGHHNHQ IFKMFDSKFN IESGIT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357380.10.0uncharacterized protein LOC112273145 isoform X2
TrEMBLA0A2K1IVS10.0A0A2K1IVS1_PHYPA; Uncharacterized protein
STRINGPP1S400_14V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]