PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_22670V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 475aa    MW: 51409.4 Da    PI: 6.2568
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_22670V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.47e-17289323135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C+t  Tp+WR gp g+ktLCnaCG++y++ +l
  Pp3c20_22670V3.1.p 289 CMHCQTQRTPQWRTGPMGPKTLCNACGVRYKSGRL 323
                         99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.424283319IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.4E-14283320IPR013088Zinc finger, NHR/GATA-type
SMARTSM004019.6E-14283333IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-14284346No hitNo description
CDDcd002021.00E-12288335No hitNo description
PfamPF003201.3E-14289323IPR000679Zinc finger, GATA-type
PROSITE patternPS003440289314IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVAPYVLAGS YGILLPEVDK PALPEVFHID DLLDFSCEEI GGPIVGGEMQ LSGVTDESSA  60
NGSETSISSS VEVKSELVDT SLGGMEVKTD LCVPCDDLAD LEWLSSFVED SFTVVDPPEV  120
FSAYDGFCSQ VSNTERTQIA KICNDYKPYQ KSSPISVLET SATSSELTGS DYLDVSVPGR  180
ARSKRSRTGA KVWTSRILPT SSSVNSLESM GADSYAMSYS PIMSDDGSGD STVGGIEQDD  240
EDSQGSKRCK LKNDGNGPNE SKNNVTVNVH SNASKGRKKN QDNSQPWRCM HCQTQRTPQW  300
RTGPMGPKTL CNACGVRYKS GRLLPEYRPA GSPTYVASKH SHSHKKVLEM RRERELRIQQ  360
TGGHGVQQQQ SMHGATPLRG KTNNQKVAGA KSSSGEHVKS EYGGGYGSKN LETMQKSFSK  420
PMEMPRPGKP EMMMYASKAS GMEFAKCLTS TTAVLGSRLE FGLDDNSMRE MRGL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358149.10.0GATA transcription factor 9-like
TrEMBLA0A2K1IW770.0A0A2K1IW77_PHYPA; Uncharacterized protein
STRINGPP1S241_14V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-52GATA transcription factor 9