PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_23380V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 609aa    MW: 66857.6 Da    PI: 8.03
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_23380V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.12e-12209286271
            trihelix   2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                         W++ e  aL++a re++ +l ++        k++  +W ev   + + g+ r+pk+ + kw+nl++ +k+i++++kk 
  Pp3c20_23380V3.1.p 209 WQDAEMDALVKAFREVNMKLAAAgkkgkqvfKSANDKWNEVRTLLLASGVDRQPKEIERKWSNLSTAFKQIADWNKKV 286
                         ******************9998533344444599******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-9208296No hitNo description
Gene3DG3DSA:3.40.50.6202.7E-75383599IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523748.94E-50386602No hitNo description
PfamPF014672.8E-24390573IPR004821Cytidyltransferase-like domain
TIGRFAMsTIGR004821.8E-44391599IPR005248Probable nicotinate-nucleotide adenylyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009435Biological ProcessNAD biosynthetic process
GO:0016779Molecular Functionnucleotidyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MEQGAPPSSA VLEGALSTST NLEQAEHNFS NQFGRDNFSG GKRQSPYGSA GYTTREGFVR  60
EPQVAFPSFV EKGTFPHDGF SRDSVSKDGE SMGLSESETA NKRQKRPDWW QEPQGVDRPS  120
GSPKDVSPSG NVIATPPPAV PSFGGLVMPY RDIRMGALVG IEGNIVEGDL GASSGEGAGV  180
GDDEDGGDGD GKERSDKEGF ARKKRAEMWQ DAEMDALVKA FREVNMKLAA AGKKGKQVFK  240
SANDKWNEVR TLLLASGVDR QPKEIERKWS NLSTAFKQIA DWNKKVGRPN YWELDEVLKK  300
EKTKAKELPA TFRVQLFEAM AEFMGDRQGA RSRSPAQGTQ GTPGHVSVPG LPRPPPAPGV  360
VEMPLPMEKL LVHANLLGDA NHKRSRVVLL APGSFNPPTY MHLRMFELGR DALTAEGHHV  420
LGGYMSPVND QFHKKGLASA DHRIRMCQLA VCDSPTIMVD SWEAKQSSYQ RTLTVLTRIE  480
AAVNSSNLAS DEKVRVMLLC GTDLLESLTT PGVWIPDQVR ALLQDYGIVC INRNGKDARR  540
LVFEHDILYN NQRQILVVDE IIQNTISATA VRRNLARGLS VKYLIPDSVI NHIKMHNLYM  600
NASSIQQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gzu_A2e-5537860311269NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_B2e-5537860311269NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_C2e-5537860311269NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.85620.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358097.10.0uncharacterized protein LOC112273477 isoform X5
RefseqXP_024358098.10.0uncharacterized protein LOC112273477 isoform X5
TrEMBLA0A2K1IWA50.0A0A2K1IWA5_PHYPA; Uncharacterized protein
STRINGPP1S241_77V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-06Trihelix family protein