PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_23720V3.1.p

Common Name

PHYPADRAFT_146252

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 66aa MW: 8093.27 Da PI: 9.1314

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_23720V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3e-09	1	48	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W+ E ell++ v+++G+g+Wk+I + + + ++k++w+++ Pp3c20_23720V3.1.p 1 KWSNKEVELLKQQVHEHGKGHWKKILKDNAdafCRQIEVDLKDKWRNF 48 7*************************9988888667889999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-9	1	48	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.8E-12	1	55	IPR009057	Homeodomain-like
CDD	cd11660	4.06E-10	1	50	No hit	No description
Pfam	PF00249	7.2E-7	1	47	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	13.243	1	53	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031627	Biological Process	telomeric loop formation
GO:0000783	Cellular Component	nuclear telomere cap complex
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
KWSNKEVELL KQQVHEHGKG HWKKILKDNA DAFCRQIEVD LKDKWRNFEK YNKLWDFLEL 60 PQYLH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390656.1	3e-14	uncharacterized protein LOC112289582 isoform X1
TrEMBL	A0A2K1IWC4	2e-39	A0A2K1IWC4_PHYPA; Uncharacterized protein (Fragment)
TrEMBL	A9TIV8	2e-39	A9TIV8_PHYPA; Predicted protein (Fragment)
STRING	PP1S966_1V6.1	3e-20	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.1	7e-10	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pp3c20_23720V3.1.p
Entrez Gene	5941804

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]