PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_5720V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 392aa MW: 42356.6 Da PI: 6.1295

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_5720V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.9	7.4e-27	297	347	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++++ dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRkiks+ Pp3c20_5720V3.1.p 297 TGKLKMTDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKIKSI 347 56899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.122	287	367	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-25	300	347	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MASGQLDSPT CEGVVLNSSH SPRFDINEFL KTPKDVNAEE QFFNFATFNS PAPACNMLTP 60 LPSFNNRRSG RTEGAPESDF SSLLFDSRGI DGEIAYADDS LNGELIAFDE IDADLAKDSF 120 ALFSGSHDNY MNNTPISPVK LEVPSYVPSP GSRLPSMTCP PTIFTAGSYM VGNLVGLVDV 180 EDRAFGSMEH GASTSDGTHP INCGGAPLDW GMSREGLIQP NFGQSHNQQF QCASCQILRR 240 IIHSNDFSKS GCAYGKGGLG QNKLHHCGSI DSTDNADMTI GPAKPPKSNA AAQRERTGKL 300 KMTDLAQHFH LPINAAAKEL GICPTVLKKI CRRNGMRRWP HRKIKSIERI IATLEQTIAE 360 GAGQGDESIR MEIAMLRNER AQLCAGFLGD T*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MASGQLDSPT CEGVVLNSSH SPRFDINEFL KTPKDVNAEE QFFNFATFNS PAPACNMLTP  60
LPSFNNRRSG RTEGAPESDF SSLLFDSRGI DGEIAYADDS LNGELIAFDE IDADLAKDSF  120
ALFSGSHDNY MNNTPISPVK LEVPSYVPSP GSRLPSMTCP PTIFTAGSYM VGNLVGLVDV  180
EDRAFGSMEH GASTSDGTHP INCGGAPLDW GMSREGLIQP NFGQSHNQQF QCASCQILRR  240
IIHSNDFSKS GCAYGKGGLG QNKLHHCGSI DSTDNADMTI GPAKPPKSNA AAQRERTGKL  300
KMTDLAQHFH LPINAAAKEL GICPTVLKKI CRRNGMRRWP HRKIKSIERI IATLEQTIAE  360
GAGQGDESIR MEIAMLRNER AQLCAGFLGD T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358580.1	1e-178	uncharacterized protein LOC112273714 isoform X1
Refseq	XP_024358581.1	1e-178	uncharacterized protein LOC112273714 isoform X2
Refseq	XP_024358583.1	1e-179	uncharacterized protein LOC112273714 isoform X4
TrEMBL	A0A2K1IU66	0.0	A0A2K1IU66_PHYPA; Uncharacterized protein
STRING	PP1S9_112V6.2	1e-180	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	4e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c20_5720V3.1.p