PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_5720V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Nin-like
Protein Properties Length: 178aa    MW: 19114.1 Da    PI: 9.4762
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_5720V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.72e-2783133252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        + ++++ dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRkiks+
  Pp3c20_5720V3.3.p  83 TGKLKMTDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKIKSI 133
                        56899********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.12273153IPR003035RWP-RK domain
PfamPF020421.8E-2586133IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSSERVMGAN SGCLPKSMGH IILPDVLCTS SDFSKSGCAY GKGGLGQNKL HHCGSIDSTD  60
NADMTIGPAK PPKSNAAAQR ERTGKLKMTD LAQHFHLPIN AAAKELGICP TVLKKICRRN  120
GMRRWPHRKI KSIERIIATL EQTIAEGAGQ GDESIRMEIA MLRNERAQLC AGFLGDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358580.11e-126uncharacterized protein LOC112273714 isoform X1
TrEMBLA0A2K1IU661e-102A0A2K1IU66_PHYPA; Uncharacterized protein
STRINGPP1S387_8V6.19e-96(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.18e-15RWP-RK domain-containing protein