PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_590V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 175aa    MW: 19644.3 Da    PI: 7.4683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_590V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.4e-054688955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH  9 ErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                      E  R ++i++++  L++l+P +     +K   K ++L + ++Y++sLq
  Pp3c20_590V3.1.p 46 EWVRCEKIRKRMKYLQDLVPGC-----RKvTGKTDMLDEIINYVQSLQ 88
                      667999***************9.....67799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.0043787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1142106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-104298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDRGCSSRMQ EAQHVVKEKM AGQHLRDFIR VRARRGQATD SLSVAEWVRC EKIRKRMKYL  60
QDLVPGCRKV TGKTDMLDEI INYVQSLQCQ AESLSMKLGA VHPAPLDHLT LESLLSIEEV  120
LQSQWSNILC TSDSTSSPEF GLQQLPQQRG SMLDGHCNFD HFQANLGYSF NGSS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358304.11e-108transcription factor bHLH63-like
SwissprotQ9C6702e-34BH076_ARATH; Transcription factor bHLH76
TrEMBLA0A2K1ITE91e-127A0A2K1ITE9_PHYPA; Uncharacterized protein
STRINGPP1S334_14V6.11e-128(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.32e-37cryptochrome-interacting basic-helix-loop-helix 5
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]