PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_6540V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 213aa MW: 23308.2 Da PI: 9.4926

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_6540V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.5	8.3e-42	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq + l+a Pp3c20_6540V3.1.p 35 PCAACKLLRRRCAQECPFSPYFSPQEPQKFACVHKIFGASNVSKMLMEVPENQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQALQA 126 7***************************************************************************************** PP DUF260 93 elallkee 100 el++++ e Pp3c20_6540V3.1.p 127 ELNAVRME 134 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.331	34	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-41	35	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MLVHSRAQHG ERKVKSPTTE SRKKMLNSQG QGSTPCAACK LLRRRCAQEC PFSPYFSPQE 60 PQKFACVHKI FGASNVSKML MEVPENQRAD AASSLVYEAN ARIRDPVYGC MGAISALQQQ 120 AQALQAELNA VRMEINRYRQ HENSPTNGTL TTTASATALV SGYQELVQDR GRASDTRSSK 180 PSTTDVHTTV HSPSSTVATS ESKDRTYWSP IT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	30	138	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	30	138	7	114	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358125.1	1e-159	LOB domain-containing protein 15-like isoform X1
Swissprot	Q9AT61	5e-58	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2K1IJC4	1e-103	A0A2K1IJC4_PHYPA; Uncharacterized protein
STRING	PP1S9_186V6.1	1e-158	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-55	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Pp3c20_6540V3.1.p

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]