PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_7050V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 481aa    MW: 53272.7 Da    PI: 8.6061
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_7050V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.64.4e-31327380255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt+ LH+ Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pp3c20_7050V3.2.p 327 PRMRWTTALHAYFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 380
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.08E-15324381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27325380IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23327380IPR006447Myb domain, plants
PfamPF002497.9E-7328379IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MQESSLDNPM TVSRSTTNPP GPDLALHISP PNSSSDTRPR TCLPQNVNQD LPEHVHGFDL  60
WRQSPKPMSS CADSESNASS PRIERCSSYL DNVGASTVLC LANPPPSDPP FLKRAPKGMT  120
LGSMEEVQMN IQENRYLGSD HAHPFLLDMD SRSETKYTGT DANRTCSPSE RVRQDFRRMF  180
TGEIQDDFSR RLNENYMDHL PLQQRVFPPA PSPSVIHELS LGRLSDPVVP SGGLSRPDCL  240
KLGNYHVGER EPGPRFPNFY GYDDDNSRRV EKGGPGQQAS TLPGNPSTFS GNIREGYSAK  300
QEGIYANLAF RSRFPLKSPC KRSIRAPRMR WTTALHAYFV QAVELLGGHE RATPKSVLEL  360
MNVKDLTLAH VKSHLQMYRT VKTSDKSGRS PGPGDLVHSP SPEARSPRES RLMSDSISKT  420
SKSMYMSNSG VHNLELGNYH NLGDGQDATV AMQKKVWLPE APSKYSPTQR GCWKFGTLSC  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-17328382357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-17328382357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-17328382357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-17328382357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.50840.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358362.10.0uncharacterized protein LOC112273624
TrEMBLA0A2K1IUD30.0A0A2K1IUD3_PHYPA; Uncharacterized protein
STRINGPP1S9_234V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-38G2-like family protein