PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_7290V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 262aa MW: 27288.6 Da PI: 11.1355

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_7290V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.6	7.5e-15	173	217	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r+rr++kNRe+A rsR+RK+a++ eLe +v +L++eN++L+k+ Pp3c20_7290V3.4.p 173 RRQRRMIKNRESAARSRARKQAYTVELEAEVSQLKEENMRLRKQQ 217 79****************************************864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-10	169	233	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	171	216	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-12	173	221	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.83E-22	173	218	No hit	No description
SuperFamily	SSF57959	4.69E-11	173	220	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.7E-14	173	222	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MASRALSPRT QGRGGGAGAG AGAGGGASNG ASASSASNGL AGSSLAGLGS RFNSLARQSS 60 IYSLTLDEFQ NALSEPGKNF GSMNMDEFLK NIWTAEESMG GGMTGGGLAM GLGGAMGGGM 120 TVNMGLAPNS PPSPDSDGGR SGLSLSPMHY GLDGSVRGRK RGPDGPVEKV VERRQRRMIK 180 NRESAARSRA RKQAYTVELE AEVSQLKEEN MRLRKQQVST RKSEEEAERR KKQIMDILKS 240 ATTVGGAKKS STLRRTKTAT W*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024357434.1	1e-142	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	3e-29	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2K1IUE8	3e-84	A0A2K1IUE8_PHYPA; Uncharacterized protein
TrEMBL	A0A4D6QI95	1e-81	A0A4D6QI95_9BRYO; Abscisic acid-insensitive 5
STRING	PP1S49_161V6.1	5e-53	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10063	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36270.1	5e-28	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c20_7290V3.4.p

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]