PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c20_8930V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 279aa    MW: 30317.3 Da    PI: 8.8391
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c20_8930V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA307e-10741135
               GATA  1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkgl 35
                       Cs+Cg  +Tpl  +gp d++  LCnaCG ++r kg+
  Pp3c20_8930V3.1.p  7 CSHCGIATTPLCPNGPpDKEV-LCNACGSRWRTKGT 41
                       ****************66666.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.5E-6153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-6545No hitNo description
CDDcd002027.93E-10641No hitNo description
Gene3DG3DSA:3.30.50.101.7E-8741IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.7E-8741IPR000679Zinc finger, GATA-type
PROSITE profilePS501578.9332754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGKQGPCSHC GIATTPLCPN GPPDKEVLCN ACGSRWRTKG TLPNHTPMHS GGSEGWASPE  60
VSALGHGNSC SSEYRSSKRK EPSGGHLQLG PIRKFAGNDS TSASSLSSYI SDSDEDANGL  120
SSPVRSDTAV DSSPPWEGRV PCRKRSSMPR ACTSVDKLIR QFQDLVYEDS PVRSSLTSES  180
EKGDIEVQAM LKRYVINADL QIKRLDKAKL KGCLSPLCLT IPRFAGIVDQ NRGIDNYLSL  240
IGVQQQKIYQ SLRFWTRGAL MITGARLSLL WIQWPASY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.144440.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357053.11e-133GATA transcription factor 26-like isoform X1
RefseqXP_024357054.11e-133GATA transcription factor 26-like isoform X1
TrEMBLA0A2K1IUN30.0A0A2K1IUN3_PHYPA; Uncharacterized protein
STRINGPP1S9_417V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.12e-26GATA transcription factor 26