PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_11880V3.3.p
Common NamePHYPADRAFT_172818
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 453aa    MW: 49280.2 Da    PI: 7.6956
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_11880V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65e-12218259346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rW +e+ +l+++a +q+G++ +++I + ++ gRt+kq+ks++ +
  Pp3c21_11880V3.3.p 218 RWKQEDTDLFYKALQQFGTD-FELIQNLFP-GRTRKQVKSKFKN 259
                         9*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-10208261IPR009057Homeodomain-like
PfamPF159631.2E-29209294No hitNo description
PROSITE profilePS512939.715214265IPR017884SANT domain
SMARTSM007173.3E-9215263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-7218259IPR009057Homeodomain-like
CDDcd001673.29E-8218259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLDGIAHNCD GWSGGAMAEA EAIAAEEVEG DEGLESMSSE AQAKPQVAPL KKARPVGAAK  60
KRKSVPRTKL GKKKDVETKT VPPKKMKETA SMDLSDPSQL TMKEIIRRAE AIERAKAKEE  120
AARKAEEKEK KGSGSRSAAR DMTTPAAQNT SAPSNSSAPS VLTPQVQIVN GRIVINQQSL  180
MVAAQASTRE DIDTYRRVEE DRPKLNSNSY SNRTHVERWK QEDTDLFYKA LQQFGTDFEL  240
IQNLFPGRTR KQVKSKFKNE ERLNPVRLAD ALGHKIQDQS HHYRAILEMI KSEKPVGDPD  300
EGLLESLLRP VVTNETSSGQ PVATQVVASE EKMDKEGSVE VPANTVALEK AKPDDPIVPV  360
SDPILFNSAV LPQSDVGTIT SKNDSPTSED PATSVPSDQS KNNASRNRLG SYGNPLSSYV  420
KEPISGNSLG NYENLSKNPL GSYGKNPLGM YN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S2e-13170305369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S2e-13170305369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S2e-13170305369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S2e-13170305369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.147190.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359822.10.0transcription factor TFIIIB component B''-like
TrEMBLA0A2K1IRN70.0A0A2K1IRN7_PHYPA; Uncharacterized protein
STRINGPP1S382_35V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8075913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-20MYB_related family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]